Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0666.Seq
         (633 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g05990.2 68415.m00652 enoyl-[acyl-carrier protein] reductase ...    31   0.48 
At2g05990.1 68415.m00651 enoyl-[acyl-carrier protein] reductase ...    31   0.48 
At3g54830.1 68416.m06074 amino acid transporter family protein b...    28   5.9  

>At2g05990.2 68415.m00652 enoyl-[acyl-carrier protein] reductase
           [NADH], chloroplast, putative / NADH-dependent enoyl-ACP
           reductase, putative strong similarity to
           enoyl-[acyl-carrier protein] reductase [NADH] SP:P80030
           from [Brassica napus]
          Length = 390

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -3

Query: 166 NLKWRRRSCALTL-NYCCL*SHTARTACKKNYRFSCR 59
           N  W + SC   L N  CL +H+A   CK+ + FS R
Sbjct: 38  NASWDKLSCTRQLSNLGCLRNHSAVPTCKRPFSFSTR 74


>At2g05990.1 68415.m00651 enoyl-[acyl-carrier protein] reductase
           [NADH], chloroplast, putative / NADH-dependent enoyl-ACP
           reductase, putative strong similarity to
           enoyl-[acyl-carrier protein] reductase [NADH] SP:P80030
           from [Brassica napus]
          Length = 390

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -3

Query: 166 NLKWRRRSCALTL-NYCCL*SHTARTACKKNYRFSCR 59
           N  W + SC   L N  CL +H+A   CK+ + FS R
Sbjct: 38  NASWDKLSCTRQLSNLGCLRNHSAVPTCKRPFSFSTR 74


>At3g54830.1 68416.m06074 amino acid transporter family protein
           belongs to INTERPRO:IPR002422 amino acid/polyamine
           transporter, family II
          Length = 546

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 540 NNXTSXFPHKCXSXGGVHVXRARTXSLINTFXTL 439
           +N +S FP+   S GG H+   R  +L+ T   L
Sbjct: 250 DNLSSMFPNASLSIGGFHLDAPRLFALLTTLAVL 283


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,988,938
Number of Sequences: 28952
Number of extensions: 124536
Number of successful extensions: 173
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)