Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0664.Seq
         (688 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi...    77   3e-15
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|...    63   3e-11
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    43   4e-05
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    32   0.089
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    26   5.9  

>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 970

 Score = 76.6 bits (180), Expect = 3e-15
 Identities = 31/64 (48%), Positives = 45/64 (70%)
 Frame = +1

Query: 67  VLNLLCAKPMTRAKYFCAAACDDDEFQHYALNVPLYTHFTSPIRRYADIMVHRLLAASLN 246
           +L +L  + M  A+YFC+      +F+HY L  P+YTHFTSPIRRYAD++ HR LAA+++
Sbjct: 769 LLRILTTRCMLSAEYFCSGTFAPPDFRHYGLASPIYTHFTSPIRRYADVLAHRQLAAAID 828

Query: 247 YREL 258
           Y  +
Sbjct: 829 YETI 832


>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 927

 Score = 63.3 bits (147), Expect = 3e-11
 Identities = 29/56 (51%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
 Frame = +1

Query: 79  LCAKPMTRAKYFCAAACDDD-EFQHYALNVPLYTHFTSPIRRYADIMVHRLLAASL 243
           +  + + RA+YFC     +  ++ HYAL+   YTHFTSPIRRY DI+VHRLL  SL
Sbjct: 730 MAVRSLNRAEYFCTGDFGEKTDWHHYALSFNHYTHFTSPIRRYPDIIVHRLLERSL 785


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1157

 Score = 43.2 bits (97), Expect = 4e-05
 Identities = 23/68 (33%), Positives = 32/68 (47%)
 Frame = +1

Query: 49   DKGRAMVLNLLCAKPMTRAKYFCAAACDDDEFQHYALNVPLYTHFTSPIRRYADIMVHRL 228
            DK   M+L L   +    ++Y    +   D   H+  + P YTHF  P RRY DI V R 
Sbjct: 859  DKRTKMLLQLTLRRMCNESEYTIGTSNAKD-VSHFVFSCPYYTHFCHPTRRYIDICVQRQ 917

Query: 229  LAASLNYR 252
            L  + + R
Sbjct: 918  LREAFDGR 925



 Score = 31.5 bits (68), Expect = 0.12
 Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
 Frame = +3

Query: 288  IAAQCNKQKYNAKKAGEMSTELYT---LKYIEXNSPIVTEGA-VVDIREKYIDVIIVSMG 455
            I   CN      + A E S   Y    L  I   S +V   A V+ + ++YID++I   G
Sbjct: 938  ITQSCNTLSNFYRNAQEKSLHAYLCQLLHSINLRSGLVKHKAFVLAVDQEYIDIVIYEFG 997

Query: 456  LNRRI 470
            L RRI
Sbjct: 998  LERRI 1002


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 31.9 bits (69), Expect = 0.089
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = +1

Query: 175 THFTSPIRRYADIMVH 222
           THFT+P+ RY DI+VH
Sbjct: 911 THFTAPLERYGDIVVH 926


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +3

Query: 294 AQCNKQKYNAKKAGEMSTELYTLKYIEXNSPIVTEGAV 407
           ++ N QK   +  G++++E  T KY    SP+  EG+V
Sbjct: 55  SRANAQK-KTESTGKITSEADTEKYNSSKSPVNKEGSV 91


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,815,518
Number of Sequences: 5004
Number of extensions: 57247
Number of successful extensions: 131
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)