Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0664.Seq
(688 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0207 - 1633177-1633372,1633623-1633688,1633778-1633859,163... 78 8e-15
02_05_0785 - 31730300-31730701,31730785-31730856,31730940-317328... 72 4e-13
01_06_1303 - 36132588-36132710,36133879-36134103,36134318-361347... 39 0.004
11_06_0366 + 22744584-22744835,22745248-22745335,22745657-227457... 38 0.010
11_06_0363 + 22724802-22725053,22725466-22725553,22725875-227259... 38 0.010
05_04_0123 + 18210069-18213737 28 8.0
>03_01_0207 -
1633177-1633372,1633623-1633688,1633778-1633859,
1633942-1634037,1634413-1634518,1634602-1634661,
1635114-1635234,1635929-1636040,1636118-1636217,
1636328-1636382,1636489-1636595,1636798-1636850,
1636989-1637114,1637909-1638065,1638226-1638421,
1638917-1639073,1639139-1639379,1639475-1639605,
1639704-1639826,1639929-1639984,1640610-1640767,
1640847-1640984,1641070-1641123
Length = 896
Score = 77.8 bits (183), Expect = 8e-15
Identities = 36/72 (50%), Positives = 47/72 (65%)
Frame = +1
Query: 43 NTDKGRAMVLNLLCAKPMTRAKYFCAAACDDDEFQHYALNVPLYTHFTSPIRRYADIMVH 222
N D ++ +L + MT+A YFC+ E+ HY L LYTHFTSPIRRYAD++VH
Sbjct: 696 NDDPYFNKLIRILATRCMTQAVYFCSGDLTFSEYYHYGLAASLYTHFTSPIRRYADVIVH 755
Query: 223 RLLAASLNYREL 258
RLLAA+L +L
Sbjct: 756 RLLAAALEIAKL 767
>02_05_0785 -
31730300-31730701,31730785-31730856,31730940-31732864,
31733000-31733150,31733944-31734009,31734247-31734645
Length = 1004
Score = 72.1 bits (169), Expect = 4e-13
Identities = 36/74 (48%), Positives = 48/74 (64%), Gaps = 4/74 (5%)
Frame = +1
Query: 67 VLNLLCAKPMTRAKYFCAA--ACDDDEFQHYALNVPLYTHFTSPIRRYADIMVHRLLAAS 240
+L +K M A+YFC A D++ HYAL+VPLYTHFTSP+RRY DI+VHR L A
Sbjct: 688 ILMFYASKQMQSAEYFCTADLISKRDDWAHYALSVPLYTHFTSPLRRYPDIIVHRTLNAV 747
Query: 241 LNYRE--LQHGRKM 276
+ + L+H R +
Sbjct: 748 IEAEKMYLKHRRSL 761
Score = 44.0 bits (99), Expect = 1e-04
Identities = 22/87 (25%), Positives = 47/87 (54%)
Frame = +3
Query: 216 GS*AISSKLKL*RTPAWQEDDVRMIAAQCNKQKYNAKKAGEMSTELYTLKYIEXNSPIVT 395
GS A+S+ K + P+ D++ +A CN++K+ +++A + +LY I+ +V
Sbjct: 794 GSEALSAAAKKFKVPS--PDNLGEVAEHCNERKWASRRAEDAGQKLYMWALIKRKEVLVA 851
Query: 396 EGAVVDIREKYIDVIIVSMGLNRRIFF 476
V+ + K++ V + + + RRI +
Sbjct: 852 NARVLGLGPKFMSVYVPKLAMERRIHY 878
>01_06_1303 -
36132588-36132710,36133879-36134103,36134318-36134713,
36135352-36135547,36135591-36135740,36135818-36135924,
36135987-36136094,36136354-36136435,36136436-36136536,
36136778-36136996,36137455-36137583,36137665-36137742,
36137816-36137929,36138071-36138230,36139224-36139441
Length = 801
Score = 38.7 bits (86), Expect = 0.004
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 148 HYALNVPLYTHFTSPIRRYADIMVHRLLAASL 243
H L +P Y FTSPIRRY D++ H + A L
Sbjct: 660 HGVLGIPGYVQFTSPIRRYVDLLAHYQIKAFL 691
>11_06_0366 +
22744584-22744835,22745248-22745335,22745657-22745702,
22746159-22746345,22746436-22746507,22746597-22746728
Length = 258
Score = 37.5 bits (83), Expect = 0.010
Identities = 22/84 (26%), Positives = 43/84 (51%)
Frame = +3
Query: 225 AISSKLKL*RTPAWQEDDVRMIAAQCNKQKYNAKKAGEMSTELYTLKYIEXNSPIVTEGA 404
A+S+ K + P+ +++ IA CN++K A E +LY I+ +V +
Sbjct: 141 ALSAAAKKFKLPS--SENLGEIAEHCNERKCAGHCAEEAGQKLYMWTLIKRKELLVADAI 198
Query: 405 VVDIREKYIDVIIVSMGLNRRIFF 476
V+ +R K++ V + + + RRI +
Sbjct: 199 VLGLRTKFMYVYVPKLTMERRIHY 222
>11_06_0363 +
22724802-22725053,22725466-22725553,22725875-22725920,
22726377-22726563,22726654-22726725,22726815-22726946
Length = 258
Score = 37.5 bits (83), Expect = 0.010
Identities = 22/84 (26%), Positives = 43/84 (51%)
Frame = +3
Query: 225 AISSKLKL*RTPAWQEDDVRMIAAQCNKQKYNAKKAGEMSTELYTLKYIEXNSPIVTEGA 404
A+S+ K + P+ +++ IA CN++K A E +LY I+ +V +
Sbjct: 141 ALSAAAKKFKLPS--SENLGEIAEHCNERKCAGHCAEEAGQKLYMWTLIKRKELLVADAI 198
Query: 405 VVDIREKYIDVIIVSMGLNRRIFF 476
V+ +R K++ V + + + RRI +
Sbjct: 199 VLGLRTKFMYVYVPKLTMERRIHY 222
>05_04_0123 + 18210069-18213737
Length = 1222
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +1
Query: 70 LNLLCAKPMTRAKYFCAAACDDDEFQHYALNVP 168
L +L K M + KY C C D E H + P
Sbjct: 806 LEVLRLKDMKKLKYLCNGFCSDKECDHQLVAFP 838
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,941,328
Number of Sequences: 37544
Number of extensions: 350856
Number of successful extensions: 664
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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