Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0664.Seq
         (688 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43842| Best HMM Match : RNB (HMM E-Value=0)                         80   2e-15
SB_21740| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.073)          71   7e-13
SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35)                   54   1e-07
SB_6010| Best HMM Match : No HMM Matches (HMM E-Value=.)               54   1e-07
SB_24462| Best HMM Match : PsbI (HMM E-Value=0.17)                     29   3.5  
SB_56517| Best HMM Match : CUB (HMM E-Value=0.0011)                    28   8.1  

>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
          Length = 1238

 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 33/59 (55%), Positives = 44/59 (74%)
 Frame = +1

Query: 67   VLNLLCAKPMTRAKYFCAAACDDDEFQHYALNVPLYTHFTSPIRRYADIMVHRLLAASL 243
            +L +L  + M +A YFC+     DE++HY L  P+YTHFTSPIRRY+DI+VHRLLA S+
Sbjct: 994  MLRILATRCMMQAVYFCSGMLPKDEYRHYGLATPIYTHFTSPIRRYSDILVHRLLAVSI 1052


>SB_21740| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.073)
          Length = 916

 Score = 71.3 bits (167), Expect = 7e-13
 Identities = 32/59 (54%), Positives = 41/59 (69%)
 Frame = +1

Query: 67  VLNLLCAKPMTRAKYFCAAACDDDEFQHYALNVPLYTHFTSPIRRYADIMVHRLLAASL 243
           +L +L  + M+ A YF   +   DEF HY L +  YTHFTSPIRRYAD++VHRLL A+L
Sbjct: 167 LLRILAVQAMSSALYFSTGSVSVDEFVHYGLALDRYTHFTSPIRRYADVIVHRLLMAAL 225


>SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35)
          Length = 2748

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 27/74 (36%), Positives = 43/74 (58%)
 Frame = +1

Query: 43   NTDKGRAMVLNLLCAKPMTRAKYFCAAACDDDEFQHYALNVPLYTHFTSPIRRYADIMVH 222
            +TD GRA+  +   +    R++Y  ++      + H+ L +  YTHFTSP+RRY DI+V 
Sbjct: 1679 DTD-GRALEAHCRLSSLQERSQYVLSSKVGPAGYGHFTLGLDAYTHFTSPLRRYFDIVVQ 1737

Query: 223  RLLAASLNYRELQH 264
            R+L A +   EL +
Sbjct: 1738 RMLVAVMLDEELPY 1751


>SB_6010| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2202

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 22/45 (48%), Positives = 33/45 (73%)
 Frame = +1

Query: 97   TRAKYFCAAACDDDEFQHYALNVPLYTHFTSPIRRYADIMVHRLL 231
            T++ Y  +   D +  +H++L + +YTHFTSPIRRY DI+VHR+L
Sbjct: 1497 TKSIYTTSYGKDKEHTRHHSLGLDVYTHFTSPIRRYIDIVVHRML 1541


>SB_24462| Best HMM Match : PsbI (HMM E-Value=0.17)
          Length = 195

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
 Frame = +1

Query: 397 KVLWLTLGR---NILMLSLFPWA*TGEYFFNNDFPGEYKCIDTKNLRS 531
           K++W  +G+    IL+  +F  + TG YF+ N FP  ++C   K  R+
Sbjct: 130 KLVWSYIGQLTARILLGIIFMVSQTG-YFYPNGFPSNFECRSIKRQRN 176


>SB_56517| Best HMM Match : CUB (HMM E-Value=0.0011)
          Length = 734

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = -1

Query: 568 HSTGFHFSSIRANFASSSCLYTYTLQENHY*KNILRFRPMETMITSIYFSLMSTT 404
           HS  F F+ IR +  S +  +T+TL   H   + L F P   + T  +   +S T
Sbjct: 321 HSLLFTFTIIRTHSHSHALSFTHTLIHTHSHSHALSFTPRTVIHTHSHPHALSFT 375


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,897,689
Number of Sequences: 59808
Number of extensions: 407100
Number of successful extensions: 898
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)