Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0664.Seq
         (688 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23514-1|AAC46543.1|  817|Caenorhabditis elegans Hypothetical pr...    82   3e-16
Z70718-6|CAA94677.1| 1029|Caenorhabditis elegans Hypothetical pr...    64   1e-10
Z67737-2|CAA91537.3|  400|Caenorhabditis elegans Hypothetical pr...    29   3.1  
U70858-7|AAB09177.1| 1484|Caenorhabditis elegans Hypothetical pr...    28   7.2  

>U23514-1|AAC46543.1|  817|Caenorhabditis elegans Hypothetical
           protein F48E8.6 protein.
          Length = 817

 Score = 82.2 bits (194), Expect = 3e-16
 Identities = 39/76 (51%), Positives = 47/76 (61%)
 Frame = +1

Query: 28  YVGPDNTDKGRAMVLNLLCAKPMTRAKYFCAAACDDDEFQHYALNVPLYTHFTSPIRRYA 207
           Y G    D     V++ L  KPM +AKYFC        + H+ALNV  YTHFTSPIRRY 
Sbjct: 583 YQGKSRLDMCIRQVISSLTIKPMQQAKYFCTFEMPLSFYHHFALNVDHYTHFTSPIRRYP 642

Query: 208 DIMVHRLLAASLNYRE 255
           D++VHR LAA+L Y E
Sbjct: 643 DVIVHRQLAAALGYNE 658


>Z70718-6|CAA94677.1| 1029|Caenorhabditis elegans Hypothetical
           protein C04G2.6 protein.
          Length = 1029

 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 26/51 (50%), Positives = 36/51 (70%)
 Frame = +1

Query: 115 CAAACDDDEFQHYALNVPLYTHFTSPIRRYADIMVHRLLAASLNYRELQHG 267
           C       ++QH+ L   +YTHFTSPIRRYAD++VHRLLAA++   ++Q G
Sbjct: 835 CLGTVPVPQYQHFGLACAIYTHFTSPIRRYADVIVHRLLAAAIGADDIQSG 885


>Z67737-2|CAA91537.3|  400|Caenorhabditis elegans Hypothetical
           protein T01H10.2 protein.
          Length = 400

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 318 NAKKAGEMSTELYTLKYIEXNSPIVTEGAVVDIREKYIDV 437
           +A K    S  LY+LK +E N P      V++I E + D+
Sbjct: 67  DAPKRYNYSIMLYSLKLVEVNEPAEKVAVVMEIMEYWYDI 106


>U70858-7|AAB09177.1| 1484|Caenorhabditis elegans Hypothetical protein
            T01C4.1 protein.
          Length = 1484

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +1

Query: 499  YKCIDTKNLRSWLEWN*NGNRLNELPETXPX*XEFFPI 612
            YKC+   ++R W   N + NR  +  ++ P    F+P+
Sbjct: 1332 YKCVPIDDVRWWTPENSDENRQGQCGKSAPLINGFYPV 1369


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,746,132
Number of Sequences: 27780
Number of extensions: 323053
Number of successful extensions: 701
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)