Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0664.Seq
         (688 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g17510.1 68415.m02025 ribonuclease II family protein similar ...    82   3e-16
At1g77680.1 68414.m09044 ribonuclease II family protein weak sim...    81   9e-16
At5g02250.1 68418.m00148 ribonuclease II family protein contains...    38   0.008
At3g17840.1 68416.m02274 leucine-rich repeat transmembrane prote...    30   1.7  
At5g54980.1 68418.m06847 integral membrane family protein simila...    29   2.9  

>At2g17510.1 68415.m02025 ribonuclease II family protein similar to
           SP|P37202 Mitotic control protein dis3
           {Schizosaccharomyces pombe}; contains Pfam profile
           PF00773: RNB-like protein
          Length = 933

 Score = 82.2 bits (194), Expect = 3e-16
 Identities = 36/64 (56%), Positives = 45/64 (70%)
 Frame = +1

Query: 67  VLNLLCAKPMTRAKYFCAAACDDDEFQHYALNVPLYTHFTSPIRRYADIMVHRLLAASLN 246
           ++ +L  + MT+A YFC+      E+ HY L  PLYTHFTSPIRRYAD+ VHRLLAASL 
Sbjct: 740 LIRILATRCMTQAVYFCSGDLSPPEYHHYGLAAPLYTHFTSPIRRYADVFVHRLLAASLG 799

Query: 247 YREL 258
             +L
Sbjct: 800 IYKL 803


>At1g77680.1 68414.m09044 ribonuclease II family protein weak
           similarity to SP|P37202 Mitotic control protein dis3
           {Schizosaccharomyces pombe}; contains Pfam profile
           PF00773: RNB-like protein
          Length = 1055

 Score = 80.6 bits (190), Expect = 9e-16
 Identities = 40/71 (56%), Positives = 46/71 (64%), Gaps = 2/71 (2%)
 Frame = +1

Query: 67  VLNLLCAKPMTRAKYFCAAACDDD--EFQHYALNVPLYTHFTSPIRRYADIMVHRLLAAS 240
           +LN    KPM  A YFC     D   E+ HYAL VPLYTHFTSP+RRY DI+VHR LAA+
Sbjct: 763 ILNNYAIKPMQLASYFCTGNLKDSVAEWGHYALAVPLYTHFTSPLRRYPDIVVHRALAAA 822

Query: 241 LNYRELQHGRK 273
           L   EL   +K
Sbjct: 823 LEAEELYSKQK 833



 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 18/63 (28%), Positives = 36/63 (57%)
 Frame = +3

Query: 288  IAAQCNKQKYNAKKAGEMSTELYTLKYIEXNSPIVTEGAVVDIREKYIDVIIVSMGLNRR 467
            +AA CN++K  A+K  +   +LYT   ++       E  V+++  +++ V I  +G+ RR
Sbjct: 881  VAAYCNERKLAARKVRDACDKLYTWFVLKQKEIFPCEARVMNLGSRFMTVYISKLGIERR 940

Query: 468  IFF 476
            I++
Sbjct: 941  IYY 943


>At5g02250.1 68418.m00148 ribonuclease II family protein contains
           Pfam profile PF00773: RNB-like protein
          Length = 803

 Score = 37.5 bits (83), Expect = 0.008
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = +1

Query: 145 QHYALNVPLYTHFTSPIRRYADIMVHRLLAASL 243
           +H  L +P Y  FTSPIRRY D+  H  + A L
Sbjct: 661 RHGVLGIPGYVQFTSPIRRYMDLTAHYQIKAFL 693


>At3g17840.1 68416.m02274 leucine-rich repeat transmembrane protein
           kinase, putative similar to receptor kinase GB:AAA33715
           from [Petunia integrifolia]
          Length = 647

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 491 GKSLLKKYSPVQAHGNNDNINIFLPNVNHSTFSDYG 384
           G   L    P+ +HGN  + NI L N + +  SD+G
Sbjct: 475 GLDYLHSQDPLSSHGNVKSSNILLTNSHDARVSDFG 510


>At5g54980.1 68418.m06847 integral membrane family protein similar
           to unknown protein (gb|AAD50013.1); contains TIGRFAM
           TIGR01569 : plant integral membrane protein TIGR01569;
           contains Pfam PF04535 : Domain of unknown function
           (DUF588)
          Length = 194

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
 Frame = -3

Query: 428 IFLPNVNHSTFSDYGRIXFNVL*SVQFC*HFTSLFSIVLLFVTLSSY------HAYIIFL 267
           I+L   NH +  DYG + +N +  +++    +++ +I  L  T+SS+       A++ F+
Sbjct: 48  IWLTVTNHESNPDYGNLEYNSIMGLKYMVGVSAISAIYALLSTVSSWVTCLVSKAWLFFI 107

Query: 266 P 264
           P
Sbjct: 108 P 108


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,644,366
Number of Sequences: 28952
Number of extensions: 291899
Number of successful extensions: 634
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)