Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0659.Seq
         (850 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   1.1  
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    27   4.4  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    26   7.8  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = +3

Query: 297  VSQAPSPESNPDSPLPVTTMVVAETGGARYPIRPIVSRITIHWPSFYNVVTGKTLAL-PN 473
            V+ AP+P S P  P PV+ +  A       P+  ++  +    PS     T  +  L P+
Sbjct: 1466 VTNAPAPSSAPAPPAPVSQLPPAV---PNVPVPSMIPSVAQQPPSSVAPATAPSSTLPPS 1522

Query: 474  LIALQHIPLSPA 509
              +  H+P SPA
Sbjct: 1523 QSSFAHVP-SPA 1533


>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
 Frame = +3

Query: 234 TTSPCREG*FAR-LLPSLDVVAVSQAPSPESNPDSPLPVTTMVVAETGGARYPIRPIVSR 410
           TT+P + G  +     ++ V++V+ +P+P +  + P PV+T        +R P+  +   
Sbjct: 158 TTTPHKAGVVSNPAAANVHVLSVAASPNPSTPSNGPAPVSTTATP----SRNPVTRLQRI 213

Query: 411 ITIHWPSFYNVVTGKTLALPN 473
            + +  S  N  TG+  A+ N
Sbjct: 214 FSQNSVSRQNSRTGRGAAVAN 234


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 434 KRRPVNCNTTHYRANWVPGPPSF 366
           + +P   N  H  +  VPGPP+F
Sbjct: 886 ENKPAESNLNHLTSAKVPGPPAF 908


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,346,502
Number of Sequences: 5004
Number of extensions: 66649
Number of successful extensions: 142
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)