Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0659.Seq
         (850 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0861 + 8153108-8153266,8154633-8155136                           38   0.013
01_06_1709 + 39337720-39337785,39338103-39338310,39338705-39339345     32   0.66 
09_02_0036 + 3217163-3217584,3217752-3218322                           30   2.0  
05_03_0087 + 8286700-8288088                                           29   6.2  
11_03_0095 - 9905323-9905793                                           28   8.2  
05_05_0317 + 24039343-24042717                                         28   8.2  

>12_01_0861 + 8153108-8153266,8154633-8155136
          Length = 220

 Score = 37.5 bits (83), Expect = 0.013
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
 Frame = +3

Query: 189 PITRPRKSPVSLFFVTTSPCREG*FARLLPSLDVVAVSQAPSPESNP--DSPLPVTTMVV 362
           P ++ R +P SL    +  C+EG   RL  S  +VA+ + P P S+P  D P   TT+ +
Sbjct: 86  PSSQLRAAPRSLLSSPSPHCQEGHDPRLCVSAGLVAIPRCPPPTSSPSLDPPESSTTVAL 145

Query: 363 AETGGARYPIRPI 401
            E    R  +  +
Sbjct: 146 IELDDRRLDLEAV 158


>01_06_1709 + 39337720-39337785,39338103-39338310,39338705-39339345
          Length = 304

 Score = 31.9 bits (69), Expect = 0.66
 Identities = 29/95 (30%), Positives = 41/95 (43%)
 Frame = -2

Query: 543 RAIGAGLFAITPLAKGGCAARRLSWVTPGFSQSRRCKTTASEL*YDSL*GELGTGPPQFL 364
           RA GAGL A+ P A+GG   RR +W   G   + R       L + S  G  G       
Sbjct: 144 RAAGAGLQAVVPEARGG--ERRRAWRRRGLVATLR-NIVRRPLAFPSASGSCGPADADAC 200

Query: 363 RLPWLSRVTGNQGSIPEREPEKRLPHPRKAAGAQI 259
            L  ++R+         ++P  R P PR+ A A +
Sbjct: 201 AL--IARLLA-------KDPAARCPRPRRRAAALV 226


>09_02_0036 + 3217163-3217584,3217752-3218322
          Length = 330

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +3

Query: 411 ITIHWPSFYNVV-TGKTLALPNLIALQH 491
           I+  W  F N+V +G TL++PN + LQH
Sbjct: 69  ISAGWSRFINLVQSGPTLSIPNYVLLQH 96


>05_03_0087 + 8286700-8288088
          Length = 462

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -1

Query: 355 MVVTGNGESGFDSGEGA*ETATTSKEGSRRANYPSRHGEVVTKNNDTGLLRG 200
           +V+T +G +G   G+GA   +TTS + +R      R    V    D  +L G
Sbjct: 32  VVLTPSGSTGNGDGDGALVVSTTSSDRNRTPRVRPRETTTVAAAADRSVLGG 83


>11_03_0095 - 9905323-9905793
          Length = 156

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = -1

Query: 388 GYRAPPVSATTMVVTGNGESGFDSGEGA*ETATTSKEGSRRANYPS 251
           G  +PP S   +   G GE+G    +GA   A T+    RR   PS
Sbjct: 106 GGGSPPPSLPDLAGGGRGEAG-GGNDGAGRAAATAARAERRRRLPS 150


>05_05_0317 + 24039343-24042717
          Length = 1124

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 24/78 (30%), Positives = 37/78 (47%)
 Frame = +3

Query: 270  LLPSLDVVAVSQAPSPESNPDSPLPVTTMVVAETGGARYPIRPIVSRITIHWPSFYNVVT 449
            LLPSL  + V   P     P  P  +  ++++ETG   + I P V      + S  ++  
Sbjct: 853  LLPSLTELEVIDCPQVTEFPPLPPTLVKLIISETG---FTILPEVHVPNCQFSS--SLAC 907

Query: 450  GKTLALPNLIALQHIPLS 503
             +    PNLI+LQ+  LS
Sbjct: 908  LQIHQCPNLISLQNGLLS 925


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,491,383
Number of Sequences: 37544
Number of extensions: 515379
Number of successful extensions: 1586
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1585
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)