Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0659.Seq
         (850 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   1.2  
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    23   3.6  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   4.7  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   4.7  
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    22   8.2  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    22   8.2  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    22   8.2  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    22   8.2  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    22   8.2  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   8.2  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 394  RIGYRAPPVSATTMVVTGNGESGFDSGEG 308
            RI + +PP+SA   V+TG       SG G
Sbjct: 1099 RISWMSPPLSAANGVITGYKVIVIPSGGG 1127


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -2

Query: 315 EREPEKRLPHPRKAAGAQITPPGTG 241
           +R  E    HP +  G Q  PPG G
Sbjct: 114 QRALEWNAAHPEEDDGGQPRPPGRG 138


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = -2

Query: 330 QGSIPEREPEKRLPHPRKAAGAQITPPGTGR 238
           + S   R P   L  P    G  ++PP T R
Sbjct: 879 ESSTDSRNPALALAEPYNQRGTVVSPPPTKR 909


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
            isoform A protein.
          Length = 969

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = -2

Query: 330  QGSIPEREPEKRLPHPRKAAGAQITPPGTGR 238
            + S   R P   L  P    G  ++PP T R
Sbjct: 917  ESSTDSRNPALALAEPYNQRGTVVSPPPTKR 947


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +3

Query: 24  SPRMRATDSAAHKCNYELFNRNNFSIRYWSWNY 122
           S   +   S ++  NY  +N NN+    ++ NY
Sbjct: 76  SKEPKIISSLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +3

Query: 24  SPRMRATDSAAHKCNYELFNRNNFSIRYWSWNY 122
           S   +   S ++  NY  +N NN+    ++ NY
Sbjct: 76  SKEPKIISSLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +3

Query: 24  SPRMRATDSAAHKCNYELFNRNNFSIRYWSWNY 122
           S   +   S ++  NY  +N NN+    ++ NY
Sbjct: 76  SKEPKIISSLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +3

Query: 24  SPRMRATDSAAHKCNYELFNRNNFSIRYWSWNY 122
           S   +   S ++  NY  +N NN+    ++ NY
Sbjct: 76  SKEPKIISSLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +3

Query: 24  SPRMRATDSAAHKCNYELFNRNNFSIRYWSWNY 122
           S   +   S ++  NY  +N NN+    ++ NY
Sbjct: 76  SKEPKIISSLSNNYNYSNYNNNNYKQLCYNINY 108


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 449 SHDVVKRRPVNCNTTHYRANWVPGP 375
           S +  K++P +C+T  YR   V  P
Sbjct: 560 SDECNKKQPSDCDTLEYRNGEVTTP 584


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 240,260
Number of Sequences: 438
Number of extensions: 5195
Number of successful extensions: 15
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)