Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0659.Seq
         (850 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identic...    32   0.55 
At3g10150.1 68416.m01217 calcineurin-like phosphoesterase family...    30   1.7  
At1g65320.1 68414.m07407 CBS domain-containing protein contains ...    30   1.7  
At3g17920.1 68416.m02282 leucine-rich repeat family protein cont...    30   2.2  
At5g49000.1 68418.m06062 kelch repeat-containing F-box family pr...    29   5.2  

>At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identical
           to gi_11935088_gb_AAG41964
          Length = 209

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = +3

Query: 189 PITRPRKSPVSLFFVTTSPCREG*FARLLPSLDVVAVSQAPSPESNPDSPLPVT 350
           PI+ P KSP +    TTSP +         +      + A SP  +P SP PV+
Sbjct: 24  PISSPTKSPTTPSAPTTSPTKSPAVTSPTTAPAKTPTASASSPVESPKSPAPVS 77


>At3g10150.1 68416.m01217 calcineurin-like phosphoesterase family
           protein contains Pfam profile: PF00149 calcineurin-like
           phosphoesterase
          Length = 367

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = +3

Query: 318 ESNPDSPLPVTTMVVAETGGARYPIRPIVSRITIHWPSFYNVVTGKTLALPNLIALQHIP 497
           ES+  S  PV  +   ++GG  YP   ++S   + W    +      L +P LI   HIP
Sbjct: 193 ESSDHSKPPVALLYFLDSGGGSYP--EVISNAQVEWFKTKSNTLNPYLRIPELI-FWHIP 249


>At1g65320.1 68414.m07407 CBS domain-containing protein contains
           Pfam profile PF00571: CBS domain
          Length = 425

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +3

Query: 186 IPITRPRKSPVSLFFVTTSPCREG*FARLLPSLDVVA-VSQAPSPESNPDSPLPVTTMV 359
           IP+ R R +P    FV  S  R+  F  +L SLD+VA +++    +      +PV+ +V
Sbjct: 44  IPVWRKRTTPSLPGFVENSEMRQQRFVGILNSLDIVAFLAKTECLQEEKAMKIPVSEVV 102


>At3g17920.1 68416.m02282 leucine-rich repeat family protein
           contains leucine rich repeat (LRR) domains, Pfam:PF00560
          Length = 962

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +3

Query: 267 RLLPSLDVVAVSQAPSPESNPDSPLPVTTMVVAETGG 377
           RLLPSL VV+   +P+ +  P S LP + + V E  G
Sbjct: 84  RLLPSLKVVSSLPSPARDPTPLSLLPFSKLKVLELRG 120


>At5g49000.1 68418.m06062 kelch repeat-containing F-box family
           protein contains F-box domain Pfam:PF00646 and Kelch
           motif Pfam:PF01344
          Length = 372

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +3

Query: 300 SQAPSPESNPDSPLP--VTTMVVAETGGARYPIRPIVSR 410
           S  PSPES P+  LP  +   ++A      YPI  +VS+
Sbjct: 12  SLEPSPESTPNPSLPDDLIVSILARVSRLYYPILSLVSK 50


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,105,030
Number of Sequences: 28952
Number of extensions: 379511
Number of successful extensions: 911
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1970388800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)