Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0653.Seq
         (816 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    29   1.0  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    27   3.2  
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   5.6  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    26   7.4  
SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr 3...    26   7.4  
SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|...    26   7.4  
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce...    25   9.7  

>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = -2

Query: 422 SVGGGAWPFLVGGAICLVNSGNERDSSLLNRRRYLGVRGLVSRNSLTT 279
           ++  G    L  G + ++N G E D  L N  RYL V  L   N++TT
Sbjct: 44  NIDAGTMSPLEHGEVFVLNDGGEVDLDLGNYERYLNVT-LTHDNNITT 90


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 645 TYLRLELXRYLIASNSKFSFLNDENTFGKCFSLMF 749
           +Y+RLE   Y  A+NS  + L  E    KC + ++
Sbjct: 756 SYIRLEDIAYPFANNSMIAILGSEEMEDKCTAAVY 790


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +1

Query: 520 VPFPSIL*VSALQPYSPRSPKSLVSRKLPAEP 615
           VP P +  V + Q Y P SP   V    PA+P
Sbjct: 415 VPAPPMQPVQSTQYYQPSSPVQPVQNVKPAQP 446


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1210

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 374  DKSLHQLRTAMHHHPPNQERAVNLSILPV 460
            D +LH     + +H  + E A NLSILP+
Sbjct: 1061 DDNLHHGEIYLRNHILSDEMANNLSILPI 1089


>SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 334

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 12/35 (34%), Positives = 14/35 (40%)
 Frame = -1

Query: 732 ICQXCFHHSRTKI*SSKRLDTAXVLTVNMSSNDPP 628
           IC  CFHH+       K  D   V     + N PP
Sbjct: 200 ICSHCFHHNGLASYGEKASDVRYVCLFCKAWNGPP 234


>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 408 TTTHRIKKELLICQSFRCPGLVRFPVLSQIKP 503
           T   R+ K  +     RCP ++R+P L  IKP
Sbjct: 375 TAPSRLSKGFITEGGIRCPAIIRYPPL--IKP 404


>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +3

Query: 501 PQSTPGGALPVNSLSFSFATILPPESKIFGFPEAA 605
           P ST   ALP   LSFS     P ++     PE+A
Sbjct: 418 PTSTMPEALPREPLSFSLPEKAPEKATNISIPESA 452


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,325,580
Number of Sequences: 5004
Number of extensions: 68009
Number of successful extensions: 166
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)