Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0653.Seq
         (816 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1625 + 28336168-28336409,28336491-28336564,28337162-283372...    29   4.4  
07_03_1709 - 28873172-28873327,28873519-28873584,28874067-288741...    29   5.8  
01_07_0306 + 42638683-42638990,42639074-42639314,42639935-426402...    29   5.8  
07_01_0130 - 963856-965454                                             28   7.7  
02_05_1011 + 33487670-33487958,33490794-33492100,33492541-334928...    28   7.7  

>08_02_1625 +
           28336168-28336409,28336491-28336564,28337162-28337236,
           28337433-28337459,28339261-28339634,28339746-28340492
          Length = 512

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = +3

Query: 501 PQSTPGGALPVNSLSFSFATILPPESKIFGFPEAARRA 614
           P+S     LPV +L   F++  PP  ++  FP AARRA
Sbjct: 3   PRSLTLSRLPVAALGLPFSSCSPPPPRL-RFPFAARRA 39


>07_03_1709 -
           28873172-28873327,28873519-28873584,28874067-28874127,
           28875406-28875462,28876301-28876531,28876685-28876799,
           28876897-28877136,28877222-28877316,28877406-28877585,
           28877663-28877839,28877920-28878890
          Length = 782

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +2

Query: 443 LSILPVSGPGEISRVESN*AAVHSWWCPSRQ 535
           L +LP SGPG  + V +  AA HS +  SRQ
Sbjct: 61  LGLLPASGPGTPTSVAAAAAAAHSPFMLSRQ 91


>01_07_0306 + 42638683-42638990,42639074-42639314,42639935-42640236,
            42640431-42640607,42640853-42641617,42641697-42641791,
            42641889-42641951,42642047-42642135,42642229-42642324,
            42642457-42643104,42643596-42643628,42643838-42643912,
            42644442-42644603,42644604-42644674,42644758-42644815,
            42645196-42645394,42645487-42645552,42645699-42646183
          Length = 1310

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 73   PRLWGIIANPNPQHEGVSAGCPGL*ARENML 165
            P LW +++ P P+++ +  G PG   R  +L
Sbjct: 1110 PFLWNVLSAPLPKNDAIDGGLPGSADRPKLL 1140


>07_01_0130 - 963856-965454
          Length = 532

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +2

Query: 386 HQLRTAMHHHPPNQERAVNLSILPVSGPGEISR 484
           H +   +   PPN     NL +LP+ GP ++ +
Sbjct: 195 HIINFLLRPEPPNTLSVDNLGVLPIIGPAKVGK 227


>02_05_1011 +
           33487670-33487958,33490794-33492100,33492541-33492853,
           33493190-33494247
          Length = 988

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -2

Query: 140 PGQPAETPSCWGLGFAIIPHKRGIPSKR 57
           PG+P +TP  W +  + +P +  +P+KR
Sbjct: 443 PGEPRDTPRGWTVSPSGLPLRVSVPTKR 470


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,729,182
Number of Sequences: 37544
Number of extensions: 560344
Number of successful extensions: 1341
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1341
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)