Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0653.Seq
         (816 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68117-2|CAA92178.1|  333|Caenorhabditis elegans Hypothetical pr...    31   1.3  
Z98877-14|CAD56615.1|  338|Caenorhabditis elegans Hypothetical p...    28   9.2  
U50193-6|AAL32262.1| 1175|Caenorhabditis elegans Cytokinesis def...    28   9.2  
U50193-5|AAL32263.1| 1178|Caenorhabditis elegans Cytokinesis def...    28   9.2  
AF469173-1|AAL79016.1| 1175|Caenorhabditis elegans ubiquitin c-t...    28   9.2  

>Z68117-2|CAA92178.1|  333|Caenorhabditis elegans Hypothetical
           protein F45E6.4 protein.
          Length = 333

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +2

Query: 500 AAVHSWWCPSRQFFKFQLCNHTPPGVQNLWFPGSCPPSHCSN 625
           A+ +   CP +  F F  C     G++  +FPG+CP   CS+
Sbjct: 196 ASANYGMCPCQHAFAFPAC-----GMETGFFPGTCPEMTCSS 232


>Z98877-14|CAD56615.1|  338|Caenorhabditis elegans Hypothetical
           protein Y69H2.14 protein.
          Length = 338

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 6/38 (15%)
 Frame = +3

Query: 87  DNCKPQSPARRSFSGLPGPLGQ----GE--HADSFSVA 182
           ++C+  +PAR+   G PGP GQ    GE  H+D+ S A
Sbjct: 190 NDCQTCAPARQGAPGPPGPAGQPGQPGEPGHSDTSSTA 227


>U50193-6|AAL32262.1| 1175|Caenorhabditis elegans Cytokinesis defect
            protein 3, isoforma protein.
          Length = 1175

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 624  TSADR*MTYLRLELXRYLIASNSKFSFLNDENTFGKC 734
            T  D+ MT  +L   +YLI    +F FL ++   GKC
Sbjct: 1056 TMRDKVMTIWKLP--KYLIIHLKRFEFLREQGRMGKC 1090


>U50193-5|AAL32263.1| 1178|Caenorhabditis elegans Cytokinesis defect
            protein 3, isoformb protein.
          Length = 1178

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 624  TSADR*MTYLRLELXRYLIASNSKFSFLNDENTFGKC 734
            T  D+ MT  +L   +YLI    +F FL ++   GKC
Sbjct: 1059 TMRDKVMTIWKLP--KYLIIHLKRFEFLREQGRMGKC 1093


>AF469173-1|AAL79016.1| 1175|Caenorhabditis elegans ubiquitin
            c-terminal hydrolase protein.
          Length = 1175

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 624  TSADR*MTYLRLELXRYLIASNSKFSFLNDENTFGKC 734
            T  D+ MT  +L   +YLI    +F FL ++   GKC
Sbjct: 1056 TMRDKVMTIWKLP--KYLIIHLKRFEFLREQGRMGKC 1090


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,301,619
Number of Sequences: 27780
Number of extensions: 421122
Number of successful extensions: 1042
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1042
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)