Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0653.Seq
         (816 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   4.5  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   5.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   7.8  

>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 169 ESACSPWPRGPGNPLKLLRA 110
           + + SP PR P NP++ L+A
Sbjct: 13  DRSTSPLPRKPVNPVQELKA 32


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -3

Query: 595  GKPKILDSGGSMVAKLKLKELTGRAPPGVDC 503
            GK + +D  G +    +LKEL G      DC
Sbjct: 1280 GKGERIDMNGKLRQSPRLKELVGATSIIKDC 1310


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -3

Query: 712 SFKNENLEFEAIRYRXSSNRKYVI*RSADVTTM 614
           + KN     EA+ Y  +   K ++ +  DVTT+
Sbjct: 91  TLKNAGTPPEAVSYNVAVPTKSILEKKPDVTTV 123


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 238,344
Number of Sequences: 438
Number of extensions: 5538
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25974678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)