Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0651.Seq
         (755 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g18640.1 68416.m02368 zinc finger protein-related contains si...    28   7.7  
At1g78995.1 68414.m09211 expressed protein                             28   7.7  

>At3g18640.1 68416.m02368 zinc finger protein-related contains
           similarity to zinc finger proteins (CCCH type)
          Length = 676

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 25/93 (26%), Positives = 42/93 (45%)
 Frame = -1

Query: 392 RPISEIKVALIIFSRSFCVNIICGEDMNSNSNSVPFQIPSAFNYLRSKGLVLKLSRKSWN 213
           R ++E  VA    S S  VN+   E  N N N++P+Q     + L + G    L+  + N
Sbjct: 359 RTMAEKPVAASHQSYSNSVNVAPVETFNQNHNALPYQ-----SSLTAGGSQQVLAAAATN 413

Query: 212 FLLRI*PADKRFGTIVNQYFHIFVSK*TLIQHS 114
           F +    ++   G +     H  V K  L+Q++
Sbjct: 414 FSVGSNLSNLESGKVYQDNHHSTVEKPVLVQNT 446


>At1g78995.1 68414.m09211 expressed protein
          Length = 159

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 506 FKSSTFCMTSCYELLNVIS*GTVGP 580
           F+S  +C+  C ++ N+I  G  GP
Sbjct: 135 FRSRNYCLVECSDICNLIGDGDYGP 159


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,242,008
Number of Sequences: 28952
Number of extensions: 273270
Number of successful extensions: 502
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)