Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0650.Seq
         (909 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8I1S6 Cluster: Glutamyl-tRNA(Gln) amidotransferase sub...    40   0.12 
UniRef50_Q8C7Z9 Cluster: 0 day neonate cerebellum cDNA, RIKEN fu...    34   4.4  
UniRef50_O77372 Cluster: Putative uncharacterized protein MAL3P6...    34   4.4  
UniRef50_Q0M216 Cluster: Putative uncharacterized protein; n=1; ...    33   7.6  

>UniRef50_Q8I1S6 Cluster: Glutamyl-tRNA(Gln) amidotransferase
           subunit A, putative; n=1; Plasmodium falciparum 3D7|Rep:
           Glutamyl-tRNA(Gln) amidotransferase subunit A, putative
           - Plasmodium falciparum (isolate 3D7)
          Length = 826

 Score = 39.5 bits (88), Expect = 0.12
 Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
 Frame = +3

Query: 279 IFNDLSCTPRK*KSTFTRFII*IDKMYYRNSLIIS--ISKVTFRYIKKK-LLVFYVNYIS 449
           I N++ C+  K      +F   + K YY N+   S  ++ +TF YI +  L  ++V+ I 
Sbjct: 508 IRNNVKCSDHKCGKRKIKFFSLLKKYYYSNTFQSSTPLNNITFGYINENNLKEYFVDDII 567

Query: 450 NKNNKSSMRAKKKRGSQNEFLSRPNCI 530
           NKN    +   KK GS  + +  PN I
Sbjct: 568 NKNYIYVIEGMKKLGSSFKQIELPNLI 594


>UniRef50_Q8C7Z9 Cluster: 0 day neonate cerebellum cDNA, RIKEN
           full-length enriched library, clone:C230071P17
           product:hypothetical protein, full insert sequence; n=1;
           Mus musculus|Rep: 0 day neonate cerebellum cDNA, RIKEN
           full-length enriched library, clone:C230071P17
           product:hypothetical protein, full insert sequence - Mus
           musculus (Mouse)
          Length = 126

 Score = 34.3 bits (75), Expect = 4.4
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +2

Query: 317 IDIYPF-HHLNRQNVLSKFFNYFNQQSNISLYKKKTFSILC 436
           +D++    H+N +N LSK   YF  +S I+L++    S LC
Sbjct: 19  LDLFSLVQHINERNDLSKATRYFYMESEIALWRNTALSTLC 59


>UniRef50_O77372 Cluster: Putative uncharacterized protein MAL3P6.23;
            n=3; Eukaryota|Rep: Putative uncharacterized protein
            MAL3P6.23 - Plasmodium falciparum (isolate 3D7)
          Length = 4981

 Score = 34.3 bits (75), Expect = 4.4
 Identities = 23/82 (28%), Positives = 44/82 (53%)
 Frame = +3

Query: 273  KEIFNDLSCTPRK*KSTFTRFII*IDKMYYRNSLIISISKVTFRYIKKKLLVFYVNYISN 452
            +EI  D+     + K+ F +        YY+  +++S  K+T   I KKL+  Y+ ++S+
Sbjct: 1318 EEINKDIKKKKMRKKTIFDKNEKISKACYYKQMILLSYKKIT-ESISKKLVHTYL-HVSS 1375

Query: 453  KNNKSSMRAKKKRGSQNEFLSR 518
             N   ++ ++KKR   N+F+ R
Sbjct: 1376 VNKHDNLSSRKKR-KINKFIKR 1396


>UniRef50_Q0M216 Cluster: Putative uncharacterized protein; n=1;
           Caulobacter sp. K31|Rep: Putative uncharacterized
           protein - Caulobacter sp. K31
          Length = 154

 Score = 33.5 bits (73), Expect = 7.6
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +1

Query: 28  GERGRGADETTRPDRNVSLRPSTVFASGNSDLGKCVSAK-RALAVHARAKCYRIQ 189
           G R +  D+  R D + + RP+ + A G+    +   AK R LAV AR  C+ IQ
Sbjct: 77  GRRRQAGDDARRADHHATQRPAAIEALGHLLREQFGVAKHRRLAVKARELCFEIQ 131


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 845,430,486
Number of Sequences: 1657284
Number of extensions: 17043224
Number of successful extensions: 39424
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 37528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39400
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 82801539422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)