Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0650.Seq
         (909 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos...    28   2.1  
SPCC663.13c |||N-acetyltransferase |Schizosaccharomyces pombe|ch...    27   3.7  
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce...    27   4.9  
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ...    26   8.5  
SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce...    26   8.5  

>SPBC947.01 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 58  TRPDRNVSLRPSTVFASGNSDLGKCVSAKRALAVHARA 171
           ++P+R+  L+P   FAS NS      +A ++ A  A A
Sbjct: 172 SKPNRSPPLKPEDPFASFNSSASAIAAASKSAAASASA 209


>SPCC663.13c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 144

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 625 PXNLKFLNPVSKRC*NSG*LIFPQSF 702
           P NLK L  ++++C +   +IFP SF
Sbjct: 9   PNNLKILEVINEKCFDPEIIIFPTSF 34


>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 983

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -2

Query: 131 HFPRSEFPLANTVDGRRLTFRSGRVVSSAPRPRSPLSVLTA 9
           H P    P+   +    LT R G V+   PRP SPL ++ A
Sbjct: 850 HAPADSLPIIYDL----LTRRRGHVLQDIPRPGSPLYLVRA 886


>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 463

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = +3

Query: 195 EIHWRSD---YRNKRKTRLLPCLPLDLWRKEIFN 287
           +IHW+SD   Y  KRK   LP L  +++  +I +
Sbjct: 21  KIHWKSDWHHYNLKRKVASLPPLSAEVFAGKILS 54


>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 27/87 (31%), Positives = 37/87 (42%)
 Frame = +3

Query: 186 TGIEIHWRSDYRNKRKTRLLPCLPLDLWRKEIFNDLSCTPRK*KSTFTRFII*IDKMYYR 365
           T  E+      R K   R++PCL    W   I   LSC  R     FT  +         
Sbjct: 67  TSSELRRLQKLRLKMDLRIIPCL----W---ILYFLSCCLR-----FTVSLSFTMNTAQG 114

Query: 366 NSLIISISKVTFRYIKKKLLVFYVNYI 446
           +SLI ++S  +  Y+   L +FYV YI
Sbjct: 115 HSLIQTLSGYSAHYLALGLALFYVGYI 141


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,547,891
Number of Sequences: 5004
Number of extensions: 73905
Number of successful extensions: 166
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)