Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0650.Seq
         (909 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024813-2|ABE73329.1| 1027|Caenorhabditis elegans Est (ever sho...    32   0.65 
AC024813-1|AAK27880.3| 1241|Caenorhabditis elegans Est (ever sho...    32   0.65 
U97005-4|AAB52283.1|  314|Caenorhabditis elegans Hypothetical pr...    29   4.6  
Z98877-1|CAB11569.2|  343|Caenorhabditis elegans Hypothetical pr...    28   8.0  

>AC024813-2|ABE73329.1| 1027|Caenorhabditis elegans Est (ever
           shorter telomeres) homologprotein 1, isoform c protein.
          Length = 1027

 Score = 31.9 bits (69), Expect = 0.65
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +3

Query: 126 KMCQRETSPRGPRAG*MLPHTGIEIHWRSDYRNKRKTRLLPCLPLDLWR-KEIFNDLSCT 302
           K C +++S   P  G      GI +++   YR+ R+ RL+P   L   R K + ++  C 
Sbjct: 513 KSCYQKSSQLWPSTGHPYNQLGIVVYYSMLYRSARRARLVPVDVLSRQRQKRVIDEFFCL 572

Query: 303 PR 308
            R
Sbjct: 573 TR 574


>AC024813-1|AAK27880.3| 1241|Caenorhabditis elegans Est (ever
           shorter telomeres) homologprotein 1, isoform a protein.
          Length = 1241

 Score = 31.9 bits (69), Expect = 0.65
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +3

Query: 126 KMCQRETSPRGPRAG*MLPHTGIEIHWRSDYRNKRKTRLLPCLPLDLWR-KEIFNDLSCT 302
           K C +++S   P  G      GI +++   YR+ R+ RL+P   L   R K + ++  C 
Sbjct: 670 KSCYQKSSQLWPSTGHPYNQLGIVVYYSMLYRSARRARLVPVDVLSRQRQKRVIDEFFCL 729

Query: 303 PR 308
            R
Sbjct: 730 TR 731


>U97005-4|AAB52283.1|  314|Caenorhabditis elegans Hypothetical
           protein F19F10.5 protein.
          Length = 314

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +2

Query: 86  ARRPCSRVETQTLENVSARNEPSRSTRGLNVTAYRDRNSLEVRLQK*TENPTAAV 250
           A  P  RV   ++EN+ A +E + S   L  +     NS   R    T +PT+++
Sbjct: 204 ANEPMRRVPLFSIENLLASSEETTSNFSLQSSPSSSSNSSSARTMSATSSPTSSL 258


>Z98877-1|CAB11569.2|  343|Caenorhabditis elegans Hypothetical
           protein Y69H2.1 protein.
          Length = 343

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +3

Query: 369 SLIISISKVTFRYIKKKLLVFYVNYIS 449
           SL+ SI+   F + +K+L++ Y NYIS
Sbjct: 58  SLVASIALCAFLWRRKRLMLKYANYIS 84


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,430,099
Number of Sequences: 27780
Number of extensions: 413157
Number of successful extensions: 956
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2318293978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)