Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0650.Seq
         (909 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g03590.1 68414.m00339 protein phosphatase 2C family protein /...    29   5.6  
At5g13090.1 68418.m01500 expressed protein predicted proteins - ...    28   7.4  
At5g38900.1 68418.m04705 DSBA oxidoreductase family protein cont...    28   9.8  

>At1g03590.1 68414.m00339 protein phosphatase 2C family protein /
           PP2C family protein similar to protein phosphatase-2C;
           PP2C (GI:3643088) [Mesembryanthemum crystallinum];
           contains Pfam PF00481 : Protein phosphatase 2C domain;
          Length = 447

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -2

Query: 704 IKDWGKINYPEF*HRLLTGLRNF 636
           +KD+G I+ PEF HR+LT    F
Sbjct: 264 LKDYGVISIPEFSHRVLTDRDQF 286


>At5g13090.1 68418.m01500 expressed protein predicted proteins -
           Arabidopsis thaliana
          Length = 269

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +3

Query: 444 ISNKNNKSSMRAKKKRGSQNEFLSRPNCIS*IESHLIWVNCGTRWXSSPN 593
           IS++ N SS    KK+ +++    +P      E    + N   RW SSPN
Sbjct: 72  ISDRGNSSSKNKTKKKSNKSSKNHKPPVFD-CECFDCYTNYWFRWDSSPN 120


>At5g38900.1 68418.m04705 DSBA oxidoreductase family protein
           contains Pfam profile: PF01323 DSBA-like thioredoxin
           domain
          Length = 217

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 584 ITEYIIGTFSQXEFXGI*NFLIQLVNGVRIPG 679
           + E  IG F+Q +F G   FL++  N V I G
Sbjct: 128 VEELFIGYFTQGKFIGDREFLVETANKVGIEG 159


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,342,769
Number of Sequences: 28952
Number of extensions: 376666
Number of successful extensions: 848
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2149324008
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)