Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0649.Seq
         (712 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces pomb...    27   2.0  
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    25   8.1  

>SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 401

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
 Frame = +2

Query: 152 LEVRQRCSELKTCG-NGLA---FDATDSKYLTENCDYLPTLSAE 271
           + +R R    K CG N +    F  +  K  T  CDY+PTLS +
Sbjct: 252 IRIRPRQQSCKACGPNKMLSREFMESSPKEYTTICDYVPTLSKQ 295


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +1

Query: 331 FPDENKCDVFWNCW 372
           F D N  D +WNCW
Sbjct: 350 FADRNFYDDWWNCW 363


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,642,342
Number of Sequences: 5004
Number of extensions: 49561
Number of successful extensions: 133
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)