Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0649.Seq
         (712 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1499 - 34006999-34007232,34007371-34007440,34007580-340076...    31   1.2  
08_02_0819 - 21529913-21530064,21531016-21531082,21531284-215313...    29   3.6  
01_06_0795 - 32051794-32053362,32053452-32053595,32054102-320549...    28   8.4  

>04_04_1499 -
           34006999-34007232,34007371-34007440,34007580-34007637,
           34007940-34007979,34008183-34008259,34008366-34008582,
           34008703-34009266
          Length = 419

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 250 PSNVECGERTQLEPPISTPHCSRLYGIF 333
           P   + GERT L PP    H  R++G+F
Sbjct: 140 PQKRDSGERTPLPPPSQQQHQDRIHGLF 167


>08_02_0819 -
           21529913-21530064,21531016-21531082,21531284-21531373,
           21531506-21531622,21532026-21532145,21532313-21533581
          Length = 604

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +2

Query: 275 GHSLSPQSPLLTVRDCTASSLMKTSATFSGTAGTEK 382
           G + +PQ+   +VR CT+ SL + SA   GTA T +
Sbjct: 47  GGTPAPQAAASSVRRCTSPSLSRASAA-EGTASTNR 81


>01_06_0795 -
           32051794-32053362,32053452-32053595,32054102-32054965,
           32055335-32055892
          Length = 1044

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 80  CGPRVLQMPRRLRFLPSPHLL 142
           C PR  + PR L +L SPH+L
Sbjct: 351 CSPRKHEPPRCLNYLTSPHVL 371


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,859,291
Number of Sequences: 37544
Number of extensions: 386451
Number of successful extensions: 1049
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1049
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)