Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0649.Seq
         (712 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.30 
SB_58074| Best HMM Match : CBM_14 (HMM E-Value=2.7e-14)                31   0.92 
SB_4930| Best HMM Match : ANF_receptor (HMM E-Value=0)                 30   2.1  
SB_17966| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_19442| Best HMM Match : Beach (HMM E-Value=0)                       29   3.7  
SB_51919| Best HMM Match : Filament_head (HMM E-Value=4.5)             29   4.9  
SB_17946| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_15447| Best HMM Match : C1_1 (HMM E-Value=0.11)                     28   6.5  
SB_39182| Best HMM Match : Cellulase (HMM E-Value=0.00018)             28   6.5  
SB_55131| Best HMM Match : fn3 (HMM E-Value=0.0083)                    28   8.6  

>SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1671

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 26/85 (30%), Positives = 34/85 (40%), Gaps = 10/85 (11%)
 Frame = +1

Query: 250 PSNVECGER---TQLEPPIS------TPHC-SRLYGIFPDENKCDVFWNCWNGEASRLSV 399
           P NV+CG     T   PP +      +P C  +  G + D N C+ F  C NG    +  
Sbjct: 489 PENVQCGPTRPPTPKVPPTTKAPFTKSPFCVGKQNGKYADANNCNGFVMCSNGYIYYMDC 548

Query: 400 QPRTLLTTEKSRVCMWADQVPEXQK 474
                    K R C WAD V   Q+
Sbjct: 549 PSNLRYDPAKGR-CEWADTVDCGQR 572



 Score = 30.3 bits (65), Expect = 1.6
 Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
 Frame = +1

Query: 292 PISTPHCS-RLYGIFPDENKCDVFWNCWNGEASRLSVQPRTLLTTEKSRVCMWADQVPEX 468
           P  +P C  +  G + D + C+ F  C NG A +    P  L    K   C W ++V   
Sbjct: 591 PPKSPFCEEKKNGDYADPSNCNGFITCSNGYAYKRDC-PFNLKFDTKKLECEWPNKV-NC 648

Query: 469 QKTKKXAKRIRLPTPGEG 522
           +        +  PTP  G
Sbjct: 649 KSRPTTVPYVTKPTPPSG 666


>SB_58074| Best HMM Match : CBM_14 (HMM E-Value=2.7e-14)
          Length = 480

 Score = 31.1 bits (67), Expect = 0.92
 Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
 Frame = +3

Query: 21  LSSQYEFEVFISVSGRPRRSVAQESFK--CPDDF-GFYPHHISCDKYWKCDNGVAN*KP 188
           L S     + ++    PR+     S    C D   G Y H   CD Y  C NG+A+  P
Sbjct: 307 LKSPATIHIPVTTRNHPRQFTVSTSVSNFCQDKADGNYAHPSKCDMYITCSNGIAHEMP 365


>SB_4930| Best HMM Match : ANF_receptor (HMM E-Value=0)
          Length = 1127

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
 Frame = +2

Query: 191 GNGLA-FDATDSKYLTENCDYLPTLSAERGHSLSPQSPLLTVRDCTASSLMKTSATFSGT 367
           GNGLA +D      LT+  + + T ++     L     L  +   T+ +L      ++GT
Sbjct: 478 GNGLANYDINIVNPLTDEWERVGTWASNSSDVLEMYKNLSHLTLNTSRALELWGEMYNGT 537

Query: 368 AGTEKPPGYQCSPGLCLRQKSPASACGLI 454
                  G QC PG  L+ +     C +I
Sbjct: 538 GIPSSTCGRQCPPGHWLKAEEEHQVCVII 566


>SB_17966| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 148

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +2

Query: 188 CGNGLAFDATDSKYLTENCDYLPTLSAERGHSLSPQSPLLTV 313
           C N      T  +++ +   YLPTLS    H + PQ  L T+
Sbjct: 48  CTNTATSSNTKQQHVVQTQQYLPTLSRNMQHVVQPQQHLPTL 89


>SB_19442| Best HMM Match : Beach (HMM E-Value=0)
          Length = 796

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 80  TTPRAAANTNKHLEFILRTKSWHES 6
           T P  A N N+H++F+ R  SW E+
Sbjct: 37  TKPIGALNPNRHVQFLERYASWDEN 61


>SB_51919| Best HMM Match : Filament_head (HMM E-Value=4.5)
          Length = 145

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +2

Query: 260 LSAERGHSLSPQSPLLTVRDCTASSLMKTSATFSGTAGTEKPPG 391
           L+A R  S S  S L +   CT+S+ ++TSA+   T+  +  PG
Sbjct: 16  LAACRFGSTSTSSSLSSWSSCTSSASLRTSASIISTSSAKILPG 59


>SB_17946| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 165

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 17/63 (26%), Positives = 28/63 (44%)
 Frame = +2

Query: 161 RQRCSELKTCGNGLAFDATDSKYLTENCDYLPTLSAERGHSLSPQSPLLTVRDCTASSLM 340
           R    ELK      + +  DS Y TE C++L  +   +G  L+    L  + D   S++ 
Sbjct: 76  RYFAGELKKAKIPWSLNVLDSYYDTEKCEWLTDIQDIKGRKLNMSLVLENILDVMQSNVT 135

Query: 341 KTS 349
           + S
Sbjct: 136 QPS 138


>SB_15447| Best HMM Match : C1_1 (HMM E-Value=0.11)
          Length = 316

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 325 GIFPDENKCDVFWNCWNGEASRLSVQPRTL 414
           G F  E++C+   NCW G + R S   R L
Sbjct: 257 GYFSCEDRCERLRNCWEGRSVRASSLLRQL 286


>SB_39182| Best HMM Match : Cellulase (HMM E-Value=0.00018)
          Length = 949

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 17/64 (26%), Positives = 29/64 (45%)
 Frame = +2

Query: 161 RQRCSELKTCGNGLAFDATDSKYLTENCDYLPTLSAERGHSLSPQSPLLTVRDCTASSLM 340
           R    ELK      + +  DS Y TE C++L  +   +G  L+    L  + D   S++ 
Sbjct: 297 RYFAGELKKAKIPWSLNVLDSYYDTEKCEWLTGIQDIKGRKLNMSLVLENILDVMQSNVT 356

Query: 341 KTSA 352
           + +A
Sbjct: 357 QPTA 360


>SB_55131| Best HMM Match : fn3 (HMM E-Value=0.0083)
          Length = 1266

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 23/99 (23%), Positives = 40/99 (40%)
 Frame = +2

Query: 161 RQRCSELKTCGNGLAFDATDSKYLTENCDYLPTLSAERGHSLSPQSPLLTVRDCTASSLM 340
           +Q+C       NG   D T S+ ++++ D + T S     + SP+   LT+      S  
Sbjct: 609 KQKCENSAVIANGSTDDVTKSEDVSKSNDVI-TSSTGSSPAHSPKPEDLTMLSTPPKSRQ 667

Query: 341 KTSATFSGTAGTEKPPGYQCSPGLCLRQKSPASACGLIR 457
               + + T   EK      + G  +  +   S  GL+R
Sbjct: 668 PEDESINKTTALEKVSAKLLATGSPVFAEISTSDGGLVR 706


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,727,894
Number of Sequences: 59808
Number of extensions: 414564
Number of successful extensions: 1092
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1092
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)