Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0649.Seq
         (712 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70757-9|CAH19098.1|  120|Caenorhabditis elegans Hypothetical pr...    31   0.81 
Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical pr...    29   2.5  
AF047656-7|AAC05108.2|  462|Caenorhabditis elegans Ligand-gated ...    29   3.3  
Z82262-2|CAB05152.1|  248|Caenorhabditis elegans Hypothetical pr...    28   5.7  
AC024830-1|AAF59605.1|  256|Caenorhabditis elegans Hypothetical ...    28   5.7  
Z81037-4|CAB02747.2|  391|Caenorhabditis elegans Hypothetical pr...    28   7.6  
U39644-2|AAA80360.2|  966|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>Z70757-9|CAH19098.1|  120|Caenorhabditis elegans Hypothetical
           protein ZK287.8b protein.
          Length = 120

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 16/59 (27%), Positives = 26/59 (44%)
 Frame = +1

Query: 247 LPSNVECGERTQLEPPISTPHCSRLYGIFPDENKCDVFWNCWNGEASRLSVQPRTLLTT 423
           +P+ V     + + PPI   H    Y ++ D   C VF N  N    R   + + L+T+
Sbjct: 1   MPTPVSFDSASLIAPPICPSHALISYCLYSDSVCCSVFGNDQNDSGRRCENRCKNLMTS 59


>Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical protein
            H02I12.1 protein.
          Length = 1319

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/51 (31%), Positives = 21/51 (41%)
 Frame = +1

Query: 310  CSRLYGIFPDENKCDVFWNCWNGEASRLSVQPRTLLTTEKSRVCMWADQVP 462
            CS       D N C+VF+ C  G    ++    T+     S VC W   VP
Sbjct: 1245 CSEHGSFIADANNCEVFYRCVWGRKVVMTCPSGTVFNPLLS-VCDWPSAVP 1294


>AF047656-7|AAC05108.2|  462|Caenorhabditis elegans Ligand-gated ion
           channel protein 6 protein.
          Length = 462

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
 Frame = +1

Query: 226 ILDRELRLPSNVECGERTQLEPPISTPHCSRLYGIFP-DENKCDVFWNCWNGEASRLSVQ 402
           +LD+++++      GE     P + +  C      FP D  KC++    W  +   LSVQ
Sbjct: 124 LLDKDMQMADLRYNGEIRTSRPAVVSSPCPLEIDNFPYDVQKCNISMGSWAFDRRFLSVQ 183

Query: 403 PRTL-LTTEKSR 435
             T+ +  +K R
Sbjct: 184 SSTIEILPQKGR 195


>Z82262-2|CAB05152.1|  248|Caenorhabditis elegans Hypothetical
           protein C43F9.5 protein.
          Length = 248

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 170 CSELKTCGNGLAFDATDSKYLTENCDYLPTLSA 268
           C+  +TC NG+    T ++Y T +C  LP +SA
Sbjct: 136 CAAGQTCMNGICCTTTGNEY-TGSCGGLPAISA 167


>AC024830-1|AAF59605.1|  256|Caenorhabditis elegans Hypothetical
           protein Y55F3BR.5 protein.
          Length = 256

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = +3

Query: 54  SVSGRPRRSVAQESFKCPD--DFGFYPHHIS 140
           S SGRP++  A  SFKC +  D  F+ H +S
Sbjct: 36  SRSGRPKKICAFSSFKCYEERDIEFFIHQVS 66


>Z81037-4|CAB02747.2|  391|Caenorhabditis elegans Hypothetical
           protein C17E4.6 protein.
          Length = 391

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +2

Query: 248 YLPTLSAERGHSLSPQSPLLTVRDCTASSLMKTSA--TFSGTAGTEKP 385
           YL +L A     +SP+ PLLT    T+  L+ +SA  T   T+ +  P
Sbjct: 339 YLKSLKALPSPQISPRVPLLTTGPITSGPLVASSAGLTVMATSTSSAP 386


>U39644-2|AAA80360.2|  966|Caenorhabditis elegans Hypothetical
           protein T10E10.4 protein.
          Length = 966

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
 Frame = +2

Query: 371 GTEKPPGYQCSP--GLCLRQKSP 433
           G E PPGY C+P  G CL    P
Sbjct: 691 GAECPPGYGCTPLGGCCLLSMEP 713


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,131,400
Number of Sequences: 27780
Number of extensions: 308998
Number of successful extensions: 895
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)