Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0649.Seq
         (712 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              23   2.2  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         22   6.6  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    22   6.6  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    22   6.6  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   6.6  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   8.7  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   8.7  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   8.7  

>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 322 YGIFPDENKCDVFWNC 369
           YG FP++ K   ++NC
Sbjct: 59  YGEFPEDEKLKCYFNC 74


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +3

Query: 141 CDKYWKCDNGVAN 179
           CD+ W  D+G+ N
Sbjct: 132 CDRLWVLDSGLVN 144


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +3

Query: 141 CDKYWKCDNGVAN 179
           CD+ W  D+G+ N
Sbjct: 132 CDRLWVLDSGLVN 144


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +3

Query: 141 CDKYWKCDNGVAN 179
           CD+ W  D+G+ N
Sbjct: 132 CDRLWVLDSGLVN 144


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 664 FXKXRNLGKXRGFPN 708
           + + RNL +  GFPN
Sbjct: 221 YSRVRNLNRTHGFPN 235


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +3

Query: 129 HHISCDKYWKCDNG 170
           H  SCD+ W  D G
Sbjct: 134 HADSCDRLWVLDTG 147


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +3

Query: 141 CDKYWKCDNGVAN 179
           CD+ W  D+G+ N
Sbjct: 130 CDRLWVLDSGLIN 142


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -3

Query: 443 MQTRDFSVVSKVRGCTDSREASPFQQFQKTSHLFS 339
           M + +FS +SKV   T      P    Q+   LF+
Sbjct: 1   MPSSEFSKISKVDRSTSPLPRKPVNPVQELKALFA 35


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,877
Number of Sequences: 438
Number of extensions: 3654
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)