Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0649.Seq
         (712 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g39550.1 68417.m05592 kelch repeat-containing F-box family pr...    32   0.43 
At3g04220.1 68416.m00446 disease resistance protein (TIR-NBS-LRR...    29   3.0  
At5g25170.1 68418.m02984 expressed protein                             29   4.0  
At5g06360.1 68418.m00712 ribosomal protein S8e family protein co...    27   9.3  
At1g06850.1 68414.m00730 bZIP transcription factor, putative con...    27   9.3  

>At4g39550.1 68417.m05592 kelch repeat-containing F-box family
           protein similar to SKP1 interacting partner 6
           [Arabidopsis thaliana] GI:10716957; contains Pfam
           profiles PF01344: Kelch motif, PF00646: F-box domain
          Length = 392

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 17/50 (34%), Positives = 21/50 (42%)
 Frame = -1

Query: 334 GRCRTVSNSEEWRLGAQAVSSLRTQRWKVVAVLGQVFGICGVESETVAAG 185
           G C+  SNS  W      V   RTQ W+ V+  G   G C +    V  G
Sbjct: 200 GGCKDCSNSSNW----MEVFDPRTQTWESVSSPGAEIGGCSIHKSAVVEG 245


>At3g04220.1 68416.m00446 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 896

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
 Frame = +2

Query: 164 QRCSELKTCGNGLAFDATDSKYLT-ENCDYLPTLSAERGHSLSPQSPLLTVRDCTASSLM 340
           +RCS L    + +  +AT+ K +    C  L  L +  G+  + Q   L +R+C  SSL+
Sbjct: 728 ERCSSLVKLPSSIG-EATNLKKINLRECLSLVELPSSFGNLTNLQE--LDLREC--SSLV 782

Query: 341 KTSATFSGTAGTEKPPGYQCS 403
           +   +F   A  E    Y+CS
Sbjct: 783 ELPTSFGNLANVESLEFYECS 803


>At5g25170.1 68418.m02984 expressed protein
          Length = 218

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = +1

Query: 397 VQPRTLLTTEKSRVCMWADQVPEXQKTKKXAKRIRLPTPGEGLPTLGSXXR*R 555
           V P  L  T+  +V    +++PE +K K  ++  R P PG  L + GS  R R
Sbjct: 150 VLPAELNETKVRQVRSKEEKIPEVEKKKLRSRSSRFP-PGPSLSSSGSLNRSR 201


>At5g06360.1 68418.m00712 ribosomal protein S8e family protein
           contains Pfam profile PF01201: Ribosomal protein S8e
          Length = 260

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +2

Query: 338 MKTSATFSGTAGTEKPPGYQ 397
           M T ATF G A T KPP Y+
Sbjct: 149 MVTKATFVGPAFTRKPPKYE 168


>At1g06850.1 68414.m00730 bZIP transcription factor, putative
           contains Pfam profile: PF00170 bZIP transcription factor
          Length = 337

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 183 KPAATVSLSTPQIPNT*PRTATTFQR*VRRED 278
           KP AT+  S+  IPN  P  +++F R  R +D
Sbjct: 11  KPGATIIPSSDPIPNADPIPSSSFHRRSRSDD 42


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,448,941
Number of Sequences: 28952
Number of extensions: 285774
Number of successful extensions: 657
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)