Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0648.Seq
         (890 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.      24   1.4  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    23   3.2  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    22   5.6  

>DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.
          Length = 162

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 3/26 (11%)
 Frame = +1

Query: 409 AGASLADQCRSQPLTHA---PACVAR 477
           +GAS  D+C+  P+ H    P CV +
Sbjct: 33  SGASTTDECQVTPVIHVLQYPGCVPK 58


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 240 DWPLLMGRWRCHCRMG 287
           D  L+ G+W C C +G
Sbjct: 700 DLKLMGGKWSCDCDLG 715


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 78  FSMVLIIHCLPCLNCFSPCS 19
           FS+ L +  LP L  FSPC+
Sbjct: 48  FSLPLDLEPLPSLFPFSPCN 67


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,031
Number of Sequences: 336
Number of extensions: 2235
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24720487
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)