Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0648.Seq
         (890 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0156 - 14532000-14532098,14532669-14534330,14534445-145346...    31   0.93 
01_06_1528 + 38011391-38011635,38012366-38012566,38012659-380128...    31   0.93 

>12_02_0156 -
           14532000-14532098,14532669-14534330,14534445-14534660,
           14534730-14534907,14535065-14535276
          Length = 788

 Score = 31.5 bits (68), Expect = 0.93
 Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
 Frame = +1

Query: 301 LCRLLQ*SEAGPANAVIIWYL---ENPNV-----LFVRIVGGVFAGASLADQCRSQPLTH 456
           LC +   + AGP    I  YL   + PN+     L V+I+G + A +S  D  +  PL H
Sbjct: 165 LCVVFAPTAAGPGIPEIKAYLNGVDTPNMFGAPQLIVKIIGSICAVSSGLDLGKEGPLVH 224

Query: 457 APACVA 474
             AC+A
Sbjct: 225 IGACLA 230


>01_06_1528 +
           38011391-38011635,38012366-38012566,38012659-38012836,
           38012946-38013208,38013380-38013649,38013753-38014950
          Length = 784

 Score = 31.5 bits (68), Expect = 0.93
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +1

Query: 370 PNVLFVRIVGGVFAGASLADQCRSQPLTHAPACVA 474
           P+ LFV+IVG +F  ++     +  P+ H  ACVA
Sbjct: 202 PSTLFVKIVGSIFGVSAGFVLGKEGPMVHTGACVA 236


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,430,439
Number of Sequences: 37544
Number of extensions: 302364
Number of successful extensions: 682
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)