Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0648.Seq
         (890 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g49890.1 68418.m06178 chloride channel protein (CLC-c) identi...    31   1.0  
At3g27170.1 68416.m03398 chloride channel protein (CLC-b) identi...    29   3.1  
At5g67470.1 68418.m08507 formin homology 2 domain-containing pro...    28   7.2  
At5g60690.1 68418.m07616 homeodomain-leucine zipper protein Revo...    28   7.2  
At5g40890.1 68418.m04965 chloride channel protein (CLC-a) identi...    28   9.6  

>At5g49890.1 68418.m06178 chloride channel protein (CLC-c) identical
           to gi:1742956
          Length = 779

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +1

Query: 340 NAVIIWYLENPNVLFVRIVGGVFAGASLADQCRSQPLTHAPACVA 474
           N +  + +  P+ LFV+I G +F  A+     +  P+ H  AC+A
Sbjct: 179 NGIDAYSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIA 223


>At3g27170.1 68416.m03398 chloride channel protein (CLC-b) identical
           to CLC-b chloride channel protein GB:CAA96058 from
           [Arabidopsis thaliana] (J. Biol. Chem. 271 (52),
           33632-33638 (1996))
          Length = 780

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
 Frame = +1

Query: 301 LCRLLQ*SEAGPANAVIIWYL---ENPNV-----LFVRIVGGVFAGASLADQCRSQPLTH 456
           LC     + AGP    I  YL   + PN+     + V+IVG + A A+  D  +  PL H
Sbjct: 148 LCVCFAPTAAGPGIPEIKAYLNGVDTPNMFGATTMIVKIVGSIGAVAAGLDLGKEGPLVH 207

Query: 457 APACVA 474
             +C+A
Sbjct: 208 IGSCIA 213


>At5g67470.1 68418.m08507 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 899

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -1

Query: 740 RXKPKPXFXXLPPFXKPARTXAENFPGXXPRSWSPS*RTCR 618
           R +P P    LPP  KP +  ++N P     S S S   CR
Sbjct: 209 RYRPSPELQPLPPLAKPPQ-PSDNSPSALSPSSSSSGEECR 248


>At5g60690.1 68418.m07616 homeodomain-leucine zipper protein
           Revoluta (REV) / fascicular fiberless 1 (IFL1) identical
           to HD-zip transcription factor Revoluta (GI:9759333)
           {Arabidopsis thaliana}; contains Pfam profiles PF01852:
           START domain and PF00046: Homeobox domain
          Length = 842

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = -3

Query: 711 PSPVREAGKNXGRKFSRXX-TAKLE-PFLEDLQEXVARLSRAFLRSVTMLLMRLNDATGG 538
           PSP   +G +     SR   T   + PF  +LQE VA ++  ++RSV   + R+  A   
Sbjct: 615 PSPENASGNSFSSSSSRCILTIAFQFPFENNLQENVAGMACQYVRSVISSVQRVAMAISP 674

Query: 537 LGL 529
            G+
Sbjct: 675 SGI 677


>At5g40890.1 68418.m04965 chloride channel protein (CLC-a) identical
           to GI:1742952 (gb|AAC05742.1)
          Length = 775

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 8/57 (14%)
 Frame = +1

Query: 328 AGPANAVIIWYL---ENPNV-----LFVRIVGGVFAGASLADQCRSQPLTHAPACVA 474
           AGP    I  YL   + PN+     + V+IVG + A A+  D  +  PL H  +C+A
Sbjct: 158 AGPGIPEIKAYLNGIDTPNMFGFTTMMVKIVGSIGAVAAGLDLGKEGPLVHIGSCIA 214


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,011,634
Number of Sequences: 28952
Number of extensions: 217249
Number of successful extensions: 472
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2090971320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)