Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0647.Seq
         (919 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    26   0.47 
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    25   0.83 

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 25.8 bits (54), Expect = 0.47
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
 Frame = +1

Query: 178 IFYCIVLIICCI----VASITRSMNGLYLKCSIY----NNVSCNVFVMIKKDFSTACTIF 333
           +FYC+++I+ CI     A I  +++ L L C  Y    + + C  F++          I+
Sbjct: 227 LFYCVLIILLCIYYFYYAFILFTVHLLLLVCIYYFYYMHLLFCCAFIIFTMHLLFLLCIY 286

Query: 334 CVYN*LIIKLKVQCYKC 384
             Y  LII L +  Y C
Sbjct: 287 YFYCALIILLCIY-YFC 302



 Score = 25.0 bits (52), Expect = 0.83
 Identities = 15/53 (28%), Positives = 22/53 (41%)
 Frame = -2

Query: 393 LINTFITLHLQFYYQLIIHTKNRTCRRKVFFYHYKYITAYIIINRTFQIQPVH 235
           L + + T+HL FY   II T +       F+Y +  +         F I  VH
Sbjct: 74  LCSGYFTVHLLFYCPFIIFTVHFLLCTYYFYYAFIILLCVYYFYYAFIIFTVH 126



 Score = 22.2 bits (45), Expect = 5.8
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +1

Query: 160 FVRVLSIFYCIVLIICCI 213
           F+  +  FYC ++I+ CI
Sbjct: 281 FLLCIYYFYCALIILLCI 298


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 25.0 bits (52), Expect = 0.83
 Identities = 8/20 (40%), Positives = 16/20 (80%)
 Frame = -3

Query: 497 NNSYVRRNWNNQPQSSNTND 438
           NNS + +N+N+ P+S+ +N+
Sbjct: 409 NNSILIKNFNDSPESNRSNE 428


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,560
Number of Sequences: 336
Number of extensions: 3770
Number of successful extensions: 8
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25651384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)