Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0647.Seq
         (919 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|...    28   1.6  
SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|...    28   1.6  
SPCC663.06c |||short chain dehydrogenase |Schizosaccharomyces po...    28   2.1  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   2.8  
SPBC2G5.01 |||DUF1682 family protein|Schizosaccharomyces pombe|c...    27   4.9  
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    26   6.5  
SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces...    26   6.5  
SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch...    26   8.6  
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch...    26   8.6  
SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2 |Schizosa...    26   8.6  
SPCC663.08c |||short chain dehydrogenase |Schizosaccharomyces po...    26   8.6  

>SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 393

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 17/65 (26%), Positives = 32/65 (49%)
 Frame = +1

Query: 169 VLSIFYCIVLIICCIVASITRSMNGLYLKCSIYNNVSCNVFVMIKKDFSTACTIFCVYN* 348
           ++ I + + LIICCI+    +S +    K  IY+  +C +  ++    S+ C  F  +  
Sbjct: 234 MMIIIWLLWLIICCILFGCVKSGDLNLNKALIYS--TCTISAVLLLIVSSVCIPFWTFER 291

Query: 349 LIIKL 363
            + KL
Sbjct: 292 TLAKL 296


>SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 368

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 17/65 (26%), Positives = 32/65 (49%)
 Frame = +1

Query: 169 VLSIFYCIVLIICCIVASITRSMNGLYLKCSIYNNVSCNVFVMIKKDFSTACTIFCVYN* 348
           ++ I + + LIICCI+    +S +    K  IY+  +C +  ++    S+ C  F  +  
Sbjct: 201 MMIIIWLLWLIICCILFGCVKSGDLNLNKALIYS--TCTISAVLLLIVSSVCIPFWTFER 258

Query: 349 LIIKL 363
            + KL
Sbjct: 259 TLAKL 263


>SPCC663.06c |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -1

Query: 721 KGDLSWXNRQXFPSHDVVKRRPSECNTTHYRANWVPGP 608
           K D+ W N   F S + V   P +   +HY+ N V GP
Sbjct: 82  KVDVLWVNSGIFHSFNTVLNTPDDVWNSHYKTN-VLGP 118


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -1

Query: 880  QNFXRXFLNKNXXPFXIWPIRQFQGAXNCWERANRXR 770
            ++  + FLN+N  P     +   +G  NCW R  R R
Sbjct: 1130 RDLIQRFLNENPDPTNSNVVNYSKGKKNCWPRDARMR 1166


>SPBC2G5.01 |||DUF1682 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 374

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 18/62 (29%), Positives = 26/62 (41%)
 Frame = +2

Query: 467 YSSFDERTSYLLIQLNVKS*IYIVRLYFLINIILRYVIXXXXXXTRGGARYPIRPIVSRI 646
           Y S  E +SYL  +LNVK+ +Y     F    +L Y +        G     + P+  R 
Sbjct: 106 YDSPTEFSSYLTGRLNVKN-VYTTLQLFPRQDLLAYSLNQIVEILLGNVMSSVLPVADRF 164

Query: 647 TF 652
            F
Sbjct: 165 QF 166


>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1050

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +1

Query: 181 FYCIVLIICCIVASITRSMNGLYLKCSIYNNVSCNVFVMI 300
           F   +L+I C+ AS+TR+  GL L   +  ++S +   +I
Sbjct: 335 FLLYLLVILCVGASVTRT--GLLLDMDVMEHISLHPLFII 372


>SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 183

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 467 NQPQSSNTNDKSKGGVHVRGPA 402
           NQ + SN+N +S G + +RG A
Sbjct: 76  NQTKPSNSNSQSNGAISIRGIA 97


>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -3

Query: 530 IFMTLHLIESTNNSYVRRNWNNQPQSSNTNDKSK 429
           IF     + S NNS ++ + N Q  SSNTND+ K
Sbjct: 652 IFDNSGYLNSLNNSILQMHQNLQ-NSSNTNDQYK 684


>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -3

Query: 533 YIFMTLHLIESTN-NSYVRRNWNNQPQSSNTNDKSKGG 423
           Y   T++  + T  NS+ RR    + Q S TN++S GG
Sbjct: 3   YSKSTIYRRQGTEPNSHFRRTVEEKSQLSGTNEESLGG 40


>SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = -1

Query: 466 INLSLPTQMTNQRGAFTSAGPHSFTHKYIYNIAPSILLSVNYTHKKSY 323
           I LS+   +   R +FT+     F  +Y YNI  +  L  N  + K Y
Sbjct: 320 IGLSVDEALVFWRKSFTNVTEDKFNKEYRYNIRHTYGLEGNRKNYKGY 367


>SPCC663.08c |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -1

Query: 715 DLSWXNRQXFPSHDVVKRRPSECNTTHYRANWVPGP 608
           D+ W N   F S   V   P +   +HY+ N V GP
Sbjct: 84  DVLWVNSAVFHSFGPVVNTPDDVWNSHYKTN-VLGP 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,226,072
Number of Sequences: 5004
Number of extensions: 59973
Number of successful extensions: 148
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)