Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0647.Seq
         (919 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0409 - 23217558-23218355,23218808-23219297,23219515-232195...    30   2.2  
01_05_0252 - 19959347-19959541,19960307-19960402,19961028-199611...    29   5.2  
04_04_0624 + 26676765-26676879,26676955-26677093,26678012-266780...    29   6.8  

>11_06_0409 -
           23217558-23218355,23218808-23219297,23219515-23219591,
           23219624-23219863,23220338-23220481,23220522-23220582,
           23220875-23220934,23221097-23221192,23221306-23221398,
           23221494-23221585
          Length = 716

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = -1

Query: 457 SLPTQMTNQRGAFTSAGPHSFTHKYIYNIAPSILLSVNYTHKKSYMP 317
           +L  ++T+ + +FT  G  SFT +     A SI  +++Y H+ ++ P
Sbjct: 484 TLEDRLTDIKKSFTFRGKKSFTWRDRVTTAASICSALDYLHRNNHKP 530


>01_05_0252 -
           19959347-19959541,19960307-19960402,19961028-19961132,
           19961220-19961439,19961515-19961584,19961659-19962181,
           19962621-19962672,19963644-19963867,19963955-19964022,
           19965005-19965231,19965747-19965864,19965938-19966058
          Length = 672

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = -2

Query: 402 THSLINTFITLHLQFYYQLIIHTKNRTCRRKVFFYHYKYITAYIIINRTF 253
           T +L   F+   + F  +LI+H K++   +K +      +TA I+ N+ F
Sbjct: 470 TDALTEAFVRTDIAFREELILHQKSKRITQKNWHPGCTAVTALIVRNKLF 519


>04_04_0624 +
           26676765-26676879,26676955-26677093,26678012-26678083,
           26678174-26678317,26678402-26678530,26678819-26678938,
           26679015-26679076,26679937-26680170,26680259-26680485,
           26680551-26680683,26680787-26680944,26681139-26681351,
           26681482-26681730
          Length = 664

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -2

Query: 228 CNTSDDTTNNKYNTIKNRQNTNE-SRVTGRQ 139
           C  ++DTTN   N  +N Q  NE SRV G Q
Sbjct: 247 CFENNDTTNRPDNQCENSQKGNESSRVDGNQ 277


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,647,388
Number of Sequences: 37544
Number of extensions: 368111
Number of successful extensions: 675
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2612387020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)