Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0647.Seq
         (919 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY121666-1|AAM51993.1| 1561|Drosophila melanogaster RE10888p pro...    31   1.7  
AF387518-1|AAL01872.1| 1564|Drosophila melanogaster Rho-GTPase a...    31   1.7  
AE014298-2594|AAN09591.1| 1561|Drosophila melanogaster CG32555-P...    31   1.7  
AE014298-2593|AAF48748.2| 1561|Drosophila melanogaster CG32555-P...    31   1.7  
AE014298-2592|AAF48749.2| 1561|Drosophila melanogaster CG32555-P...    31   1.7  
AF364550-2|AAK52058.1| 1065|Drosophila melanogaster RNA-directed...    30   5.1  
AE014296-3091|AAF49203.1|  699|Drosophila melanogaster CG11619-P...    29   8.9  

>AY121666-1|AAM51993.1| 1561|Drosophila melanogaster RE10888p
           protein.
          Length = 1561

 Score = 31.5 bits (68), Expect = 1.7
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -1

Query: 403 HSFTH-KYIYNIAPSILLSVNYTHKKSYMPSKSLFLSLQI 287
           H+  H KY+Y+I   ++LS+  T  KSY P  S    L+I
Sbjct: 728 HTQNHQKYVYDILNIVILSLKLTEMKSYEPYPSNHTDLRI 767


>AF387518-1|AAL01872.1| 1564|Drosophila melanogaster Rho-GTPase
           activating protein p190 protein.
          Length = 1564

 Score = 31.5 bits (68), Expect = 1.7
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -1

Query: 403 HSFTH-KYIYNIAPSILLSVNYTHKKSYMPSKSLFLSLQI 287
           H+  H KY+Y+I   ++LS+  T  KSY P  S    L+I
Sbjct: 728 HTQNHQKYVYDILNIVILSLKLTEMKSYEPYPSNHTDLRI 767


>AE014298-2594|AAN09591.1| 1561|Drosophila melanogaster CG32555-PC,
           isoform C protein.
          Length = 1561

 Score = 31.5 bits (68), Expect = 1.7
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -1

Query: 403 HSFTH-KYIYNIAPSILLSVNYTHKKSYMPSKSLFLSLQI 287
           H+  H KY+Y+I   ++LS+  T  KSY P  S    L+I
Sbjct: 728 HTQNHQKYVYDILNIVILSLKLTEMKSYEPYPSNHTDLRI 767


>AE014298-2593|AAF48748.2| 1561|Drosophila melanogaster CG32555-PB,
           isoform B protein.
          Length = 1561

 Score = 31.5 bits (68), Expect = 1.7
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -1

Query: 403 HSFTH-KYIYNIAPSILLSVNYTHKKSYMPSKSLFLSLQI 287
           H+  H KY+Y+I   ++LS+  T  KSY P  S    L+I
Sbjct: 728 HTQNHQKYVYDILNIVILSLKLTEMKSYEPYPSNHTDLRI 767


>AE014298-2592|AAF48749.2| 1561|Drosophila melanogaster CG32555-PA,
           isoform A protein.
          Length = 1561

 Score = 31.5 bits (68), Expect = 1.7
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -1

Query: 403 HSFTH-KYIYNIAPSILLSVNYTHKKSYMPSKSLFLSLQI 287
           H+  H KY+Y+I   ++LS+  T  KSY P  S    L+I
Sbjct: 728 HTQNHQKYVYDILNIVILSLKLTEMKSYEPYPSNHTDLRI 767


>AF364550-2|AAK52058.1| 1065|Drosophila melanogaster RNA-directed
           DNA polymerase protein.
          Length = 1065

 Score = 29.9 bits (64), Expect = 5.1
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = -2

Query: 330 NRTCRRKVFFYHYKYITAY-IIINRTFQIQPVH*PCNTSDDTTNNKYNTIKNRQNTNESR 154
           ++ C  K  FY +K+   Y I++ R +        C TS+  T NKY      ++ NE  
Sbjct: 54  SKLCPTKQTFYLHKFSEKYDILLGREYLEDSKATICYTSNTVTLNKYTFKLRLEDINEEE 113

Query: 153 VTGRQ 139
            T ++
Sbjct: 114 ETPKE 118


>AE014296-3091|AAF49203.1|  699|Drosophila melanogaster CG11619-PA
           protein.
          Length = 699

 Score = 29.1 bits (62), Expect = 8.9
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -2

Query: 423 RSRPRARTHSLINTFITLHLQFYYQLIIHTKNRTCRR 313
           + + +ART   +  +I    +FYY+ +I++KNR   R
Sbjct: 113 KEQDKARTKWYLRVWICASQRFYYRYLIYSKNRQGNR 149


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,725,044
Number of Sequences: 53049
Number of extensions: 653586
Number of successful extensions: 1979
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1963
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4505424660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)