Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0647.Seq
         (919 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41021-9|AAQ81276.1|  408|Caenorhabditis elegans Temporarily ass...    33   0.29 
U41021-8|AAQ81275.1|  406|Caenorhabditis elegans Temporarily ass...    33   0.29 
Z74034-1|CAA98479.1|  313|Caenorhabditis elegans Hypothetical pr...    32   0.50 
U41017-7|AAY86315.1|  251|Caenorhabditis elegans Hypothetical pr...    32   0.50 
U23514-6|AAC46544.2|  816|Caenorhabditis elegans Hypothetical pr...    31   0.87 
AC006790-13|AAF60737.2|  351|Caenorhabditis elegans Serpentine r...    29   6.2  

>U41021-9|AAQ81276.1|  408|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 24, isoform b protein.
          Length = 408

 Score = 33.1 bits (72), Expect = 0.29
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -2

Query: 633 IGRIGYRAPPRVFFFFFYITYLN 565
           IG  G+ APP VF FFF++ Y N
Sbjct: 348 IGAFGHEAPPLVFKFFFWLGYCN 370


>U41021-8|AAQ81275.1|  406|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 24, isoform a protein.
          Length = 406

 Score = 33.1 bits (72), Expect = 0.29
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -2

Query: 633 IGRIGYRAPPRVFFFFFYITYLN 565
           IG  G+ APP VF FFF++ Y N
Sbjct: 346 IGAFGHEAPPLVFKFFFWLGYCN 368


>Z74034-1|CAA98479.1|  313|Caenorhabditis elegans Hypothetical
           protein F43A11.1 protein.
          Length = 313

 Score = 32.3 bits (70), Expect = 0.50
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = -2

Query: 393 LINTFITLHLQFYYQLIIHTKNRTCRRKVFFYHYKYITAYIIINRTFQIQPVH 235
           LINT  TL+L   YQ+++   NR C     F+  KY   + + N T  +  ++
Sbjct: 94  LINTSTTLYLGNEYQIVLIALNRFC---ALFFPMKYSKIFSVFNTTAVLASIY 143


>U41017-7|AAY86315.1|  251|Caenorhabditis elegans Hypothetical
           protein T26C11.8 protein.
          Length = 251

 Score = 32.3 bits (70), Expect = 0.50
 Identities = 12/51 (23%), Positives = 25/51 (49%)
 Frame = +1

Query: 169 VLSIFYCIVLIICCIVASITRSMNGLYLKCSIYNNVSCNVFVMIKKDFSTA 321
           +L  + C+V   CC+V  +   +   ++ C+IY     N+    + + ST+
Sbjct: 182 LLGFYNCLVTFACCLVYFLPTVLGIWFMYCTIYEEQDANIVTSSQANVSTS 232


>U23514-6|AAC46544.2|  816|Caenorhabditis elegans Hypothetical
           protein F48E8.4 protein.
          Length = 816

 Score = 31.5 bits (68), Expect = 0.87
 Identities = 18/45 (40%), Positives = 21/45 (46%)
 Frame = -2

Query: 414 PRARTHSLINTFITLHLQFYYQLIIHTKNRTCRRKVFFYHYKYIT 280
           P A T +  N FI LH     QLI+  K R    KV  Y  +Y T
Sbjct: 667 PHATTDANENAFINLHKDLGPQLILEVKERIWNSKVEKYRTEYWT 711


>AC006790-13|AAF60737.2|  351|Caenorhabditis elegans Serpentine
           receptor, class z protein5 protein.
          Length = 351

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 15/64 (23%), Positives = 32/64 (50%)
 Frame = +1

Query: 199 IICCIVASITRSMNGLYLKCSIYNNVSCNVFVMIKKDFSTACTIFCVYN*LIIKLKVQCY 378
           +IC ++  +   +  ++    I N +  ++F ++   +  +C IF V+N L+  L VQ +
Sbjct: 66  LICVMLVILLLCLFEMFYGFKIMNMLELDLFDVLYHYYFISCVIFPVFNILLTLLAVQRF 125

Query: 379 KCIY 390
              Y
Sbjct: 126 FIYY 129


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,014,018
Number of Sequences: 27780
Number of extensions: 349099
Number of successful extensions: 882
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2349764032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)