Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0647.Seq
         (919 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g74045.1 68414.m08575 hypothetical protein                          29   4.3  
At1g10280.1 68414.m01158 expressed protein contains Pfam profile...    29   4.3  
At5g49730.1 68418.m06158 ferric reductase-like transmembrane com...    28   10.0 
At1g63830.2 68414.m07224 proline-rich family protein contains pr...    28   10.0 
At1g63830.1 68414.m07223 proline-rich family protein contains pr...    28   10.0 

>At1g74045.1 68414.m08575 hypothetical protein
          Length = 215

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -2

Query: 603 RVFFFFFYITYLNIIFIKKYNLTIYIYDFTF 511
           R+F FFFY   + II +  Y++   IY+ TF
Sbjct: 36  RLFNFFFYGMVVLIIIVSYYSIKCSIYNTTF 66


>At1g10280.1 68414.m01158 expressed protein contains Pfam profile
           PF03267: Arabidopsis protein of unknown function, DUF266
          Length = 412

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
 Frame = -3

Query: 575 HISILYLLKNIT*LYIFMTLHLIESTNNSYVRRNWNNQPQ--SSNTNDKS 432
           HI +L L + ++ L IFM   +I    +S++ R +N+ P+  SS TN +S
Sbjct: 12  HIGLLKLAQTLSFLLIFMAGIIIGLAASSHIDRYFNSLPRMFSSTTNLQS 61


>At5g49730.1 68418.m06158 ferric reductase-like transmembrane
           component family protein similar to ferric-chelate
           reductase (FRO1) [Pisum sativum] GI:15341529; contains
           Pfam profile PF01794: Ferric reductase like
           transmembrane componenent
          Length = 738

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 591 FFFYITYLNIIFIKKYNLTIYIY 523
           F   IT L+I +IK+YN+T + Y
Sbjct: 579 FISMITLLDIFYIKRYNITTWWY 601


>At1g63830.2 68414.m07224 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965;
           contains 1 predicted transmembrane domain
          Length = 232

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 18/47 (38%), Positives = 21/47 (44%)
 Frame = +1

Query: 148 CDAGFVRVLSIFYCIVLIICCIVASITRSMNGLYLKCSIYNNVSCNV 288
           C  GF+  LS   CI  I+ CIV S   S     L C   + V C V
Sbjct: 118 CIIGFMFCLSQVACIFSIVACIVGSDELSEASQILSCCA-DMVYCTV 163


>At1g63830.1 68414.m07223 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965;
           contains 1 predicted transmembrane domain
          Length = 232

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 18/47 (38%), Positives = 21/47 (44%)
 Frame = +1

Query: 148 CDAGFVRVLSIFYCIVLIICCIVASITRSMNGLYLKCSIYNNVSCNV 288
           C  GF+  LS   CI  I+ CIV S   S     L C   + V C V
Sbjct: 118 CIIGFMFCLSQVACIFSIVACIVGSDELSEASQILSCCA-DMVYCTV 163


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,597,248
Number of Sequences: 28952
Number of extensions: 301553
Number of successful extensions: 671
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2178500352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)