Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0644.Seq
         (845 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    23   2.3  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    23   2.3  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           23   2.3  
AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    23   3.0  
AM292358-1|CAL23170.2|  331|Tribolium castaneum gustatory recept...    21   9.3  
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    21   9.3  

>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +3

Query: 261 SVRNSQASPWLRLFQNAYSWAINH*YKTYHLRIFG-CTPRFYKKN 392
           S R S   P+L  F N+ +  +NH + T HL  +  C    Y +N
Sbjct: 57  SCRFSINQPYLNHFDNSVTPMVNHDF-TQHLSQYDTCQQGIYPEN 100


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +3

Query: 261 SVRNSQASPWLRLFQNAYSWAINH*YKTYHLRIFG-CTPRFYKKN 392
           S R S   P+L  F N+ +  +NH + T HL  +  C    Y +N
Sbjct: 57  SCRFSINQPYLNHFDNSVTPMVNHDF-TQHLSQYDTCQQGIYPEN 100


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +3

Query: 261 SVRNSQASPWLRLFQNAYSWAINH*YKTYHLRIFG-CTPRFYKKN 392
           S R S   P+L  F N+ +  +NH + T HL  +  C    Y +N
Sbjct: 57  SCRFSINQPYLNHFDNSVTPMVNHDF-TQHLSQYDTCQQGIYPEN 100


>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = +3

Query: 234 GSLPHGNNPSVRNSQASPWLRLFQNAYSWAIN 329
           G +   N+P       +PW R ++N  S  +N
Sbjct: 211 GGIAAENSPLYWGGADTPWQREYENVNSTVVN 242



 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/24 (29%), Positives = 11/24 (45%)
 Frame = +3

Query: 147 WAGWCPFT*RPSHSYDATSRALCF 218
           W     F     HS+ AT + +C+
Sbjct: 6   WVNLALFCLHVQHSHGATDKVICY 29


>AM292358-1|CAL23170.2|  331|Tribolium castaneum gustatory receptor
           candidate 37 protein.
          Length = 331

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = -3

Query: 561 HTIEKHDFF*NFGLLMSFYIIMLR*RTDY 475
           + I +   F  F  +++F I+M++  T+Y
Sbjct: 300 YAINRSTIFRMFNAIVTFLIVMVQFETNY 328


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = -3

Query: 561 HTIEKHDFF*NFGLLMSFYIIMLR*RTDY 475
           + I +   F  F  +++F I+M++  T+Y
Sbjct: 620 YAINRSTIFRMFNAIVTFLIVMVQFETNY 648


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,316
Number of Sequences: 336
Number of extensions: 4861
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23348025
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)