Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0644.Seq
         (845 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    78   2e-15
SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo...    28   1.9  
SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual    27   2.5  
SPBC14F5.12c |cbh2||centromere binding protein Cbh2|Schizosaccha...    27   3.3  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    26   7.7  

>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
            Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 77.8 bits (183), Expect = 2e-15
 Identities = 38/74 (51%), Positives = 47/74 (63%)
 Frame = +1

Query: 1    VAHGEGRFTVADGSLLDKLYKNGQVAVQYVDDDGKPTEVYPMNPNGSPDGLAGVRSRDGR 180
            VAHGEGR      S  ++  K G   + YV++  + T  YP NPNGS D +AGVRS  GR
Sbjct: 1218 VAHGEGRAVFDSESDYEQFKKEGLDLIYYVNNYNERTSRYPFNPNGSRDAIAGVRSPCGR 1277

Query: 181  HIAMMPHPERCVLR 222
             +AMMPHPER VL+
Sbjct: 1278 FLAMMPHPERVVLK 1291



 Score = 25.8 bits (54), Expect = 7.7
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 285  PWLRLFQNAYSW 320
            PW+RLFQ+A  W
Sbjct: 1310 PWIRLFQSARKW 1321


>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 225 AMSGSLPHGNNPSVRNSQASPWLRLFQN 308
           ++  SLPH   P ++NS   PW+    N
Sbjct: 179 SLKNSLPHPYEPEIQNSVYPPWVSEMSN 206


>SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 180

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = -3

Query: 486 RTDYKTISKLRQKNLDRIFLNIIKQHIFYGRRFFYKILAYTQRSLNDTFCI 334
           R  Y  +   RQK +   +++++  + ++G R FY+I  Y+   L    C+
Sbjct: 23  RKTYLQLQVRRQKYM-AFYVSLLVWNFYFGYRVFYRISKYSLIDLTYKLCL 72


>SPBC14F5.12c |cbh2||centromere binding protein
           Cbh2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 175 RHVNGHQPAHLDFHWDSSGTPR 110
           R  N H P  +DFHW  +GT R
Sbjct: 239 RQANAH-PDSMDFHWRYNGTAR 259


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +2

Query: 2   SRTAKDDSRSPTVPYSTNCTRTDKSLYSMSTTTES 106
           S T    S SPT    T+ + T  SL S STT+ S
Sbjct: 94  SSTNSTTSASPTSSSLTSSSATSSSLASSSTTSSS 128


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,518,812
Number of Sequences: 5004
Number of extensions: 76927
Number of successful extensions: 144
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)