Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0644.Seq
         (845 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0033 + 220125-220190,220274-224445,224863-224949,225048-22...    97   1e-20
01_06_1608 - 38612754-38616947,38617030-38617095                       95   5e-20
11_06_0692 + 26327487-26328509                                         30   2.7  
01_02_0111 - 11220179-11220322,11220430-11220497,11220611-112206...    29   4.7  
06_01_0082 + 656362-657798                                             29   6.2  
01_06_0728 + 31544005-31544856,31545439-31545597,31545705-31546028     29   6.2  
06_03_0619 + 22801576-22802016,22802111-22802596                       28   8.1  
02_02_0174 + 7463199-7463417,7463504-7464181                           28   8.1  

>05_01_0033 + 220125-220190,220274-224445,224863-224949,225048-225084,
            225296-225356,225666-226918
          Length = 1891

 Score = 97.5 bits (232), Expect = 1e-20
 Identities = 43/77 (55%), Positives = 52/77 (67%)
 Frame = +1

Query: 4    AHGEGRFTVADGSLLDKLYKNGQVAVQYVDDDGKPTEVYPMNPNGSPDGLAGVRSRDGRH 183
            AHGEGR    D ++L  + K+    V+Y DD    TEVYP NPNGSP G+A + S DGRH
Sbjct: 1311 AHGEGRAFFPDENVLASVVKSNLAPVRYCDDANNITEVYPFNPNGSPLGIAALCSPDGRH 1370

Query: 184  IAMMPHPERCVLRWQCP 234
            +AMMPHPERC + WQ P
Sbjct: 1371 LAMMPHPERCFMMWQYP 1387


>01_06_1608 - 38612754-38616947,38617030-38617095
          Length = 1419

 Score = 95.5 bits (227), Expect = 5e-20
 Identities = 42/77 (54%), Positives = 51/77 (66%)
 Frame = +1

Query: 4    AHGEGRFTVADGSLLDKLYKNGQVAVQYVDDDGKPTEVYPMNPNGSPDGLAGVRSRDGRH 183
            AHGEGR    D ++L  +  +    V+Y DD    TEVYP NPNGSP G+A + S DGRH
Sbjct: 1315 AHGEGRAFFPDENVLASVVNSNLAPVRYCDDANNITEVYPFNPNGSPLGIAALCSPDGRH 1374

Query: 184  IAMMPHPERCVLRWQCP 234
            +AMMPHPERC + WQ P
Sbjct: 1375 LAMMPHPERCFMMWQYP 1391



 Score = 30.3 bits (65), Expect = 2.0
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +3

Query: 282  SPWLRLFQNAYSWAI 326
            SPWLR+FQNA  W +
Sbjct: 1405 SPWLRMFQNAREWCL 1419


>11_06_0692 + 26327487-26328509
          Length = 340

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 18/52 (34%), Positives = 22/52 (42%)
 Frame = +1

Query: 160 VRSRDGRHIAMMPHPERCVLRWQCPAPCPTVTIRLYATAKPRRGCGSSKMPT 315
           +RSR  R  A    P R   RW+ P+P P     + A A P     SS   T
Sbjct: 151 IRSRSVRRKARSMSPFRT--RWRAPSPAPETAEEVEAVATPAASRSSSSSST 200


>01_02_0111 -
           11220179-11220322,11220430-11220497,11220611-11220644,
           11220735-11220766,11220900-11220959,11221276-11221729
          Length = 263

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
 Frame = -1

Query: 179 RPS-RERTP--ASPSGLPLGFIGYTSVGFPSSSTYCTATCPFLYSLSSREPSATVNRPSP 9
           RPS R +TP  A+PS  P G +G T    P + T+       LY+   + P + ++R  P
Sbjct: 9   RPSPRRKTPWGAAPSPAPRGELGTTGDTSPRAPTHVALLPRPLYTNPRQPPPSRLHRSPP 68


>06_01_0082 + 656362-657798
          Length = 478

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 34  DGSLLDKLYKNGQVAVQYVDDDGKP 108
           D    +K +K GQV   Y DDDG P
Sbjct: 272 DADRCEKCFKRGQVWALYGDDDGMP 296


>01_06_0728 + 31544005-31544856,31545439-31545597,31545705-31546028
          Length = 444

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
 Frame = +1

Query: 205 ERCVL-RWQCPAPCPTV-TIRLYATAKPRRGCGSSKMPTRGLLIINTKRII*GSLGVRQD 378
           + C L RW CPA CP + T++L+  A P+R      +  +   ++ T  ++   +G    
Sbjct: 140 DSCALPRW-CPAACPGLRTLKLHHVAIPQR---MISVILKAAPVLETLEMV-YCMGFAGS 194

Query: 379 FIKKTSSIKNMLF 417
              ++S+++N+LF
Sbjct: 195 CSMESSTVRNLLF 207


>06_03_0619 + 22801576-22802016,22802111-22802596
          Length = 308

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +1

Query: 253 TIRLYATAKPRRGCGSSKMPTRGLLIINTKRII*GSLGVRQD 378
           + + YA A P  G G S M   G  ++N  R      GV++D
Sbjct: 9   SFKKYADASPASGVGGSDMEAGGEGVVNLDRFFEDVEGVKED 50


>02_02_0174 + 7463199-7463417,7463504-7464181
          Length = 298

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -1

Query: 284 RGLAVAYRRIVTVGQGAGHCQRKTQRSGCG 195
           RG     RRIV    G G  +RK +  GCG
Sbjct: 92  RGQTHLLRRIVRRSSGGGGAKRKEEAGGCG 121


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,924,919
Number of Sequences: 37544
Number of extensions: 486087
Number of successful extensions: 1206
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1205
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)