Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0644.Seq
         (845 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52131| Best HMM Match : AIRS_C (HMM E-Value=1.69978e-42)           101   6e-22
SB_58853| Best HMM Match : SNF (HMM E-Value=0)                         30   2.1  
SB_11295| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_40390| Best HMM Match : BON (HMM E-Value=0.68)                      29   6.3  
SB_12686| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_12412| Best HMM Match : Kinesin (HMM E-Value=6.3e-15)               28   8.3  
SB_51828| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_52131| Best HMM Match : AIRS_C (HMM E-Value=1.69978e-42)
          Length = 1371

 Score =  101 bits (243), Expect = 6e-22
 Identities = 45/76 (59%), Positives = 52/76 (68%)
 Frame = +1

Query: 1    VAHGEGRFTVADGSLLDKLYKNGQVAVQYVDDDGKPTEVYPMNPNGSPDGLAGVRSRDGR 180
            VAHGEGR       +LD +       V+YVDDDG  T  YP+NPNGSP G+AG+ S DGR
Sbjct: 1264 VAHGEGRAQFVRPEVLDNVVSKNLAPVRYVDDDGNITTQYPLNPNGSPLGIAGLCSPDGR 1323

Query: 181  HIAMMPHPERCVLRWQ 228
            H+AMMPHPERC L WQ
Sbjct: 1324 HLAMMPHPERCTLPWQ 1339



 Score = 34.3 bits (75), Expect = 0.13
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = +3

Query: 282  SPWLRLFQNAYSWAI 326
            SPWLR+FQNAY W +
Sbjct: 1354 SPWLRMFQNAYEWCV 1368


>SB_58853| Best HMM Match : SNF (HMM E-Value=0)
          Length = 905

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = +1

Query: 709 LNYFLKREP---YPKLWKWIGPILVIKYLXAVLNNWXK*SIKF 828
           L Y LK  P   +   WK++ PILVI  L A L N     IK+
Sbjct: 443 LEYMLKMRPSKYFTICWKYVSPILVILLLGASLINMGLQPIKY 485


>SB_11295| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 438

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 444 LDRIFLNIIKQHIFYGRRFFYKIL 373
           L RI  ++ K+H FY R +FYK +
Sbjct: 411 LGRIIEHVTKEHAFYDRPYFYKFV 434


>SB_40390| Best HMM Match : BON (HMM E-Value=0.68)
          Length = 561

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = +1

Query: 187 AMMPHPERCVLRWQCPAPCPTVTIRLYATAKPR 285
           A++P+P   +L+ QCP PC  ++ +  ATA PR
Sbjct: 161 ALVPNP---LLQPQCPTPCYCLSAQPPATALPR 190


>SB_12686| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 71

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = -1

Query: 167 ERTPASPSGLPLGFIGYTSVGFPSSSTYCTATCPFLYSLSSREPSATVNRPS 12
           +  PAS S L +  I +     P   T   A C FL ++ S + +  ++ PS
Sbjct: 8   KEVPASISTLYVNIISHIMGSNPPDLTVLKAVCEFLIAIHSSDDTTRLHSPS 59


>SB_12412| Best HMM Match : Kinesin (HMM E-Value=6.3e-15)
          Length = 1001

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 61  KNGQVAVQYVDDDGKPTEVYPMNPNG 138
           K  QV  Q + ++G P E YP+ P+G
Sbjct: 844 KKNQVTAQPIAENGYPQESYPVAPSG 869


>SB_51828| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 857

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 14/38 (36%), Positives = 16/38 (42%)
 Frame = +3

Query: 162 PFT*RPSHSYDATSRALCFTLAMSGSLPHGNNPSVRNS 275
           PFT  P H    T      +     S+PH  NP VR S
Sbjct: 150 PFTPPPHHQPRGTGMIKSQSYTYGLSMPHSENPDVRRS 187


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,368,587
Number of Sequences: 59808
Number of extensions: 548054
Number of successful extensions: 1234
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1234
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2395401800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)