Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0644.Seq
         (845 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein p...    25   2.9  
U03849-1|AAA53488.1|  388|Anopheles gambiae putative nucleic aci...    24   5.1  
AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript...    24   5.1  
AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcript...    24   6.7  
AF387858-1|AAL58708.1|  209|Anopheles gambiae integrase protein.       23   8.8  
AF387857-1|AAL58707.1|  215|Anopheles gambiae integrase protein.       23   8.8  

>AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein
            protein.
          Length = 3325

 Score = 25.0 bits (52), Expect = 2.9
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +1

Query: 697  WCVRLNYFLKREPYPKL 747
            W VR  YF KR  YP+L
Sbjct: 2090 WYVRDLYFFKRSQYPQL 2106


>U03849-1|AAA53488.1|  388|Anopheles gambiae putative nucleic acid
           binding protein protein.
          Length = 388

 Score = 24.2 bits (50), Expect = 5.1
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +3

Query: 216 FTLAMSGSLPHGNNPSVRNSQASPWLRLFQNAYSWAIN 329
           FTL  + S PH  N   R +      R+ +++ S  +N
Sbjct: 114 FTLLQTASTPHNRNSDPRPATGRKRRRIIEDSASPGVN 151


>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1201

 Score = 24.2 bits (50), Expect = 5.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 105  AHRGVPDESQWKSRWAG 155
            AHR +PD   W+SR  G
Sbjct: 969  AHRVIPDVGSWQSRKHG 985


>AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1173

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 18/57 (31%), Positives = 22/57 (38%)
 Frame = +3

Query: 105  AHRGVPDESQWKSRWAGWCPFT*RPSHSYDATSRALCFTLAMSGSLPHGNNPSVRNS 275
            AHR +PD   W+SR  G   F      S     R     +  + S    N P VR S
Sbjct: 913  AHRLIPDIGAWQSRKHGEVNFHLSQIISGHGFFRKYLADMKFTSSPDCPNCPGVRES 969


>AF387858-1|AAL58708.1|  209|Anopheles gambiae integrase protein.
          Length = 209

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 203 GCGIIAM*RPSRERTPASPSGLPLGFIGY 117
           GC  I    P+ +R+   P G  L F+GY
Sbjct: 14  GCSAIVH-VPAEKRSKLDPKGKKLMFVGY 41


>AF387857-1|AAL58707.1|  215|Anopheles gambiae integrase protein.
          Length = 215

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 203 GCGIIAM*RPSRERTPASPSGLPLGFIGY 117
           GC  I    P+ +R+   P G  L F+GY
Sbjct: 14  GCSAIVH-VPAEKRSKLDPKGKKLMFVGY 41


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 874,463
Number of Sequences: 2352
Number of extensions: 19744
Number of successful extensions: 33
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 89718867
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)