Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0644.Seq
         (845 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35598-1|CAA84656.1| 1343|Caenorhabditis elegans Hypothetical pr...    79   5e-15
Z70271-3|CAA94234.1|  358|Caenorhabditis elegans Hypothetical pr...    31   1.0  
AC024830-9|ABQ13052.1| 1594|Caenorhabditis elegans Hypothetical ...    30   1.8  
AL021503-7|CAI79271.1|  277|Caenorhabditis elegans Hypothetical ...    28   7.3  
AL021503-6|CAA16424.2|  459|Caenorhabditis elegans Hypothetical ...    28   7.3  

>Z35598-1|CAA84656.1| 1343|Caenorhabditis elegans Hypothetical protein
            F10F2.2 protein.
          Length = 1343

 Score = 78.6 bits (185), Expect = 5e-15
 Identities = 39/82 (47%), Positives = 48/82 (58%), Gaps = 7/82 (8%)
 Frame = +1

Query: 4    AHGEGRFTVADGSLLDKLYKNGQVAVQYVDDDGKPTE-------VYPMNPNGSPDGLAGV 162
            +HGEGRFT  +      L  NGQV +++ DD G            YP NPNGS D +A +
Sbjct: 1227 SHGEGRFTYRNLQNFQNLKTNGQVCIRFCDDRGMTGADHGSVKLPYPWNPNGSIDDVAAI 1286

Query: 163  RSRDGRHIAMMPHPERCVLRWQ 228
             SRDGRH+AMMPH +R  L WQ
Sbjct: 1287 CSRDGRHLAMMPHADRSFLTWQ 1308



 Score = 31.9 bits (69), Expect = 0.59
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 210  LCFTLAMSGSLPHGNNPSVRNSQASPWLRLFQNAYSWAI 326
            L +  A S  +P       +    SPW+++F+NAY+W +
Sbjct: 1305 LTWQWAESSEVPWNARFDQKTVALSPWIKMFRNAYNWCL 1343


>Z70271-3|CAA94234.1|  358|Caenorhabditis elegans Hypothetical
           protein W08D2.6 protein.
          Length = 358

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +1

Query: 94  DDGKPTEVYPMNPNGS--PDGLAGVRSRDGRHIAMMPHPE 207
           D GKP E+ P    G   PDG  G +  DGR +   P P+
Sbjct: 223 DPGKPGEMGPNGFQGKVGPDGFPGEKGGDGRRLIGRPGPK 262


>AC024830-9|ABQ13052.1| 1594|Caenorhabditis elegans Hypothetical
            protein Y55F3BR.2 protein.
          Length = 1594

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 19/91 (20%), Positives = 37/91 (40%)
 Frame = +1

Query: 136  GSPDGLAGVRSRDGRHIAMMPHPERCVLRWQCPAPCPTVTIRLYATAKPRRGCGSSKMPT 315
            G P G A   + DG     +P P+ C   ++C     T   +    +K   GCG ++   
Sbjct: 1184 GCPTGRAAFIAIDGNSQECLPGPDMCSDGYEC-VKSTTHKSKNICCSKEEGGCGDNEAMV 1242

Query: 316  RGLLIINTKRII*GSLGVRQDFIKKTSSIKN 408
             G  ++  K  + G     ++ ++    ++N
Sbjct: 1243 DGGCVVRVK--VGGGCHTNEECVEGADCVQN 1271


>AL021503-7|CAI79271.1|  277|Caenorhabditis elegans Hypothetical
           protein Y68A4A.10b protein.
          Length = 277

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +2

Query: 56  CTRTDKSLYSMSTTTESPPRCTR*IPMEVQ 145
           CT+T + +  + TTT++P   T+ +P++ Q
Sbjct: 50  CTKTPQRVDPVKTTTKAPAATTKAVPLQCQ 79


>AL021503-6|CAA16424.2|  459|Caenorhabditis elegans Hypothetical
           protein Y68A4A.10a protein.
          Length = 459

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +2

Query: 56  CTRTDKSLYSMSTTTESPPRCTR*IPMEVQ 145
           CT+T + +  + TTT++P   T+ +P++ Q
Sbjct: 50  CTKTPQRVDPVKTTTKAPAATTKAVPLQCQ 79


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,236,014
Number of Sequences: 27780
Number of extensions: 431987
Number of successful extensions: 1002
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 999
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)