Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0644.Seq
         (845 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g74260.1 68414.m08600 AIR synthase-related family protein con...    98   6e-21
At2g17890.1 68415.m02072 calcium-dependent protein kinase family...    29   2.9  
At5g04290.1 68418.m00422 KOW domain-containing transcription fac...    29   5.1  
At2g07714.1 68415.m00964 transcription factor-related similar to...    28   9.0  
At1g76390.1 68414.m08877 armadillo/beta-catenin repeat family pr...    28   9.0  
At1g18650.1 68414.m02325 glycosyl hydrolase family protein 17 si...    28   9.0  

>At1g74260.1 68414.m08600 AIR synthase-related family protein contains
            Pfam profiles: PF00586 AIR synthase related protein,
            N-terminal domain, PF02769 AIR synthase related protein,
            C-terminal domain
          Length = 1387

 Score = 98.3 bits (234), Expect = 6e-21
 Identities = 43/77 (55%), Positives = 51/77 (66%)
 Frame = +1

Query: 4    AHGEGRFTVADGSLLDKLYKNGQVAVQYVDDDGKPTEVYPMNPNGSPDGLAGVRSRDGRH 183
            AHGEGR    D  +LD +  +    ++Y DDDG  TE YP N NGSP G+A + S DGRH
Sbjct: 1281 AHGEGRAYFPDEGVLDHMLHSDLAPLRYCDDDGNVTEAYPFNLNGSPLGIAAICSPDGRH 1340

Query: 184  IAMMPHPERCVLRWQCP 234
            +AMMPHPERC L WQ P
Sbjct: 1341 LAMMPHPERCFLMWQFP 1357



 Score = 29.1 bits (62), Expect = 3.9
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 264  VRNSQASPWLRLFQNAYSW 320
            V  +  SPWL++FQNA  W
Sbjct: 1365 VEKAGPSPWLKMFQNARDW 1383


>At2g17890.1 68415.m02072 calcium-dependent protein kinase family
           protein / CDPK family protein contains Pfam domains,
           PF00069: Protein kinase domain and PF00036: EF hand
          Length = 571

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = +1

Query: 196 PHPERCVLRWQCP-APCP--TVTIRLYATAKPRRGCGSSKMPTR 318
           PHP   V++ + P +PC    VTI+     +PRR   + K PTR
Sbjct: 23  PHPPLTVVKSRPPRSPCSFMAVTIQKDHRTQPRRNATAKKTPTR 66


>At5g04290.1 68418.m00422 KOW domain-containing transcription factor
            family protein
          Length = 1493

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 304  WKSRNHGEAWLLRTDGLLPWGKEPD 230
            W   N G +W  + DG   WGK+ D
Sbjct: 935  WGQPNDGSSWGKKGDGAASWGKKDD 959


>At2g07714.1 68415.m00964 transcription factor-related similar to
           male sterility 1 proteins (GI:15554513,GI:15554515))
           [Arabidopsis thaliana]
          Length = 196

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 164 RTPASPSGLPLGFIGYTSVGFPSSSTYCTATCP 66
           ++ A P  +P+G I   SV  PS   Y T  CP
Sbjct: 119 KSRAPPIRIPIGKIEAPSVVLPSMKAYGTRACP 151


>At1g76390.1 68414.m08877 armadillo/beta-catenin repeat family
           protein / U-box domain-containing protein contains Pfam
           domain, PF00514: Armadillo/beta-catenin-like repeats and
           Pfam, PF04564: U-box domain
          Length = 811

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +2

Query: 635 GFTPLINVLLGNKTMNL 685
           G TP++NVLL N+T NL
Sbjct: 728 GITPILNVLLENRTENL 744


>At1g18650.1 68414.m02325 glycosyl hydrolase family protein 17
           similar to beta-1,3-glucanase GI:15150341 from [Camellia
           sinensis]; C-terminal homology only
          Length = 184

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -1

Query: 119 YTSVGFPSSSTYCTATCPFLYSLSSREPSATVNRP 15
           YT+  FP+S++    T P   + S+R P+ T  RP
Sbjct: 99  YTTCPFPASASGSGTTTPVTTTPSTRVPTTTNTRP 133


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,990,640
Number of Sequences: 28952
Number of extensions: 393402
Number of successful extensions: 945
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1960634400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)