Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0643.Seq
         (726 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.19c |||queuine tRNA-ribosyltransferase|Schizosaccharomy...    74   2e-14
SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomy...    30   0.39 
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p...    28   1.6  
SPAC11D3.18c |||nicotinic acid plasma membrane transporter |Schi...    26   4.8  
SPAC631.01c |acp2||F-actin capping protein beta subunit |Schizos...    25   8.3  

>SPAC1687.19c |||queuine tRNA-ribosyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 74.1 bits (174), Expect = 2e-14
 Identities = 33/69 (47%), Positives = 48/69 (69%)
 Frame = +2

Query: 311 RARRGRLVFDRGVVETPCFMPVGTYGTVKGMTPEEVEATGAQIILGNTFHLWLRPGQEIM 490
           RAR   +    G+VE+P FMPVGT  ++KG+ PE+++A G +I+L NT+HL L+PGQE++
Sbjct: 20  RARVTDIQLPHGLVESPVFMPVGTQASLKGVLPEQLDALGCKIMLNNTYHLGLKPGQEVL 79

Query: 491 KLHGRFARF 517
              G   RF
Sbjct: 80  DTVGGAHRF 88


>SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 29.9 bits (64), Expect = 0.39
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 314 ARRGRLVFDRGVVETPCFMPVGTYGTVKGMTPEEVE 421
           AR   +     V++TPCF    + GTV  +TP+ VE
Sbjct: 12  ARVSSVTVKNKVLKTPCFFLPTSRGTVPHLTPDNVE 47


>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1033

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 16  GFQYKVVDALVTNFHLPESTLIMLV 90
           G QYK +D L   F+LP + L+ ++
Sbjct: 874 GLQYKTIDTLEKEFNLPSNQLLAML 898


>SPAC11D3.18c |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/48 (25%), Positives = 22/48 (45%)
 Frame = -3

Query: 391 GAVGANRHKTRRFHYATIKDQAATACATVGGVQFKFHFFSIRQKNSQR 248
           G V    ++++      + +     C  VGG+ +   FFS+R  N +R
Sbjct: 426 GIVAGQIYRSKNAPKYILGNAFTLGCVIVGGLAYVVMFFSLRYVNKKR 473


>SPAC631.01c |acp2||F-actin capping protein beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 268

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 288 NFIFSPYVRKTANVLNQRRGITP 220
           NF+   Y  KT +++NQ R I P
Sbjct: 226 NFLQDVYFGKTKDIINQTRSIQP 248


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,869,536
Number of Sequences: 5004
Number of extensions: 55736
Number of successful extensions: 125
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)