Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0643.Seq
         (726 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0464 + 17820164-17820181,17820972-17821065,17821251-178214...    80   2e-15
10_06_0005 + 9459181-9459409,9459672-9459714,9460274-9460360,946...    31   0.93 
04_01_0539 - 6986728-6986996,6987807-6988284,6988580-6988594,699...    30   2.2  
06_03_0382 - 20142830-20144329                                         29   2.8  
06_01_0096 - 794148-794246,795682-796975,798960-799417                 28   8.7  

>09_04_0464 +
           17820164-17820181,17820972-17821065,17821251-17821429,
           17821959-17822009,17822683-17822739,17822854-17822974,
           17823187-17823253,17823342-17823383,17823629-17823734,
           17823864-17823974,17824248-17824319,17824423-17824524,
           17824597-17824758,17824961-17825119
          Length = 446

 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 37/79 (46%), Positives = 51/79 (64%)
 Frame = +2

Query: 281 MKFELDTTDGRARRGRLVFDRGVVETPCFMPVGTYGTVKGMTPEEVEATGAQIILGNTFH 460
           ++FE+     RAR  RL       +TP FMPVGT GT+KG+T +++E  G QIILGNT+H
Sbjct: 3   LRFEVLGRFNRARAARLTLPHFTCQTPLFMPVGTQGTIKGLTTDQLEEIGCQIILGNTYH 62

Query: 461 LWLRPGQEIMKLHGRFARF 517
           L LRPG +++   G   +F
Sbjct: 63  LELRPGSQLIDDLGGLHKF 81


>10_06_0005 +
           9459181-9459409,9459672-9459714,9460274-9460360,
           9460669-9460810
          Length = 166

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 364 FYACWHLRHRKRDDAGRS*SHWRAN 438
           FY CWH+RHR+     R  S+W +N
Sbjct: 142 FYGCWHMRHRRLRFVLRR-SNWSSN 165


>04_01_0539 -
           6986728-6986996,6987807-6988284,6988580-6988594,
           6990029-6990043,6990279-6990875
          Length = 457

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 16/60 (26%), Positives = 25/60 (41%)
 Frame = +2

Query: 353 ETPCFMPVGTYGTVKGMTPEEVEATGAQIILGNTFHLWLRPGQEIMKLHGRFARFYAVEG 532
           + PC + + +YGTV  +   E+E  G  +       LW+    E  KL       Y  +G
Sbjct: 292 QAPCSVVLASYGTVYSLDGAELEELGNGLCNSGKPFLWVVRSSEAHKLSKELREKYKEKG 351


>06_03_0382 - 20142830-20144329
          Length = 499

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = -3

Query: 499 VQFHDFLARAQPQVEGVAEDNLRASGFNFFRRHPFYGAVGANRHKTRRF 353
           V+ H+ +A  + ++  V E     + + +FRR P  GA G   H+ RRF
Sbjct: 67  VRIHEVMANKR-RICVVMEYVRGGALYRYFRRGPSGGAAGLREHEARRF 114


>06_01_0096 - 794148-794246,795682-796975,798960-799417
          Length = 616

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -1

Query: 471 RSHRWKVLPRIICAPVASTSSGVI 400
           +SHRW+    I+ A V ST++GV+
Sbjct: 451 KSHRWRAAHIIVIALVQSTANGVL 474


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,918,248
Number of Sequences: 37544
Number of extensions: 423825
Number of successful extensions: 1071
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1071
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)