Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0643.Seq
         (726 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17549| Best HMM Match : TGT (HMM E-Value=4.5e-25)                   73   2e-13
SB_48164| Best HMM Match : DUF1168 (HMM E-Value=0.19)                  31   1.3  
SB_15235| Best HMM Match : DUF1421 (HMM E-Value=1.5)                   31   1.3  
SB_42290| Best HMM Match : Band_41 (HMM E-Value=3.6e-09)               29   5.1  
SB_57472| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_56923| Best HMM Match : PT (HMM E-Value=0.95)                       28   8.9  

>SB_17549| Best HMM Match : TGT (HMM E-Value=4.5e-25)
          Length = 319

 Score = 73.3 bits (172), Expect = 2e-13
 Identities = 42/86 (48%), Positives = 52/86 (60%)
 Frame = +2

Query: 245 KTLAVFLTYGEKMKFELDTTDGRARRGRLVFDRGVVETPCFMPVGTYGTVKGMTPEEVEA 424
           KT    LT+  K+  E  TT  +AR G L      VETP FMPVGT GT+KG+T  ++E 
Sbjct: 6   KTRESALTF--KILAECSTT--KARTGILTLPHHRVETPVFMPVGTQGTMKGLTCSQLED 61

Query: 425 TGAQIILGNTFHLWLRPGQEIMKLHG 502
              QIILGNT+HL +RPG E +   G
Sbjct: 62  LDCQIILGNTYHLGMRPGTETLDKAG 87


>SB_48164| Best HMM Match : DUF1168 (HMM E-Value=0.19)
          Length = 1883

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 19/58 (32%), Positives = 27/58 (46%)
 Frame = -1

Query: 537  SAPSTA*NRANRPCSFMISWPGRSHRWKVLPRIICAPVASTSSGVIPFTVP*VPTGIK 364
            +AP T+   A +P S + +  G  HR K +   + AP  S      P +    PTGIK
Sbjct: 1597 TAPKTSKRFATKPGSSIDAPTGNKHRIKAVSSSVTAPKTSKRFATKPGSSIDAPTGIK 1654


>SB_15235| Best HMM Match : DUF1421 (HMM E-Value=1.5)
          Length = 754

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 19/58 (32%), Positives = 27/58 (46%)
 Frame = -1

Query: 537 SAPSTA*NRANRPCSFMISWPGRSHRWKVLPRIICAPVASTSSGVIPFTVP*VPTGIK 364
           +AP T+   A +P S + +  G  HR K +   + AP  S      P +    PTGIK
Sbjct: 468 TAPKTSKRFATKPGSSIDAPTGNKHRIKAVSSSVTAPKTSKRFATKPGSSIDAPTGIK 525


>SB_42290| Best HMM Match : Band_41 (HMM E-Value=3.6e-09)
          Length = 474

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/31 (41%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
 Frame = +3

Query: 495 CTGDSHDFMQWKGPILTELR-RLPGLQPWRL 584
           C  D++ ++  + P+LT+LR  LPG +P+RL
Sbjct: 47  CVNDTNVWLNLRNPVLTQLRPHLPG-KPYRL 76


>SB_57472| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 315

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +3

Query: 507 SHDFMQWKGPILTELRRLPGLQPWRLFVKSPNRGVXL 617
           +H     KGPI+  +  L   Q WR+FV+  N GV L
Sbjct: 133 NHGVCLVKGPIMASV--LSKGQSWRIFVQRANNGVCL 167


>SB_56923| Best HMM Match : PT (HMM E-Value=0.95)
          Length = 441

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = -1

Query: 537 SAPSTA*NRANRPCSFMISWPGRSHRWKVLPRIICAPVASTSSGVIPFTVP 385
           S P+ + +    PC   +S+P RS      P + C P + TSS   P   P
Sbjct: 307 STPTESTSSMTSPCGSQMSYPARSP-----PHVQCDPFSPTSSAGHPSPFP 352


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,271,129
Number of Sequences: 59808
Number of extensions: 456951
Number of successful extensions: 990
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)