Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0643.Seq
         (726 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73899-4|CAA98076.1|  400|Caenorhabditis elegans Hypothetical pr...    76   3e-14

>Z73899-4|CAA98076.1|  400|Caenorhabditis elegans Hypothetical
           protein ZK829.6 protein.
          Length = 400

 Score = 75.8 bits (178), Expect = 3e-14
 Identities = 35/74 (47%), Positives = 49/74 (66%)
 Frame = +2

Query: 281 MKFELDTTDGRARRGRLVFDRGVVETPCFMPVGTYGTVKGMTPEEVEATGAQIILGNTFH 460
           M++++    G ARRG L     +VETP FMPVGT GT+KG+ PE++ +   +I+L NT+H
Sbjct: 1   MRYDVLARAGFARRGNLHLPHSIVETPVFMPVGTQGTMKGIVPEQLVSMDCRILLCNTYH 60

Query: 461 LWLRPGQEIMKLHG 502
           L  RPG E +K  G
Sbjct: 61  LGHRPGHERVKAAG 74


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,241,536
Number of Sequences: 27780
Number of extensions: 330017
Number of successful extensions: 704
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)