Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0643.Seq
         (726 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g53320.1 68414.m06043 F-box family protein / tubby family pro...    28   5.5  
At4g24970.1 68417.m03578 ATP-binding region, ATPase-like domain-...    28   7.2  
At2g15690.1 68415.m01796 pentatricopeptide (PPR) repeat-containi...    28   7.2  
At3g05360.1 68416.m00584 disease resistance family protein / LRR...    27   9.6  

>At1g53320.1 68414.m06043 F-box family protein / tubby family
           protein (TULP7) similar to Tubby related protein 2
           (Tubby-like protein 2) (P4-6 protein) (Fragment)
           (SP:P46686) [Mus musculus]; similar to phosphodiesterase
           (GI:467578) [Mus musculus]; similar to Tubby protein
           homolog 1. (Swiss-Prot:Q09306) [Caenorhabditis elegans] 
           contains Pfam profile: PF01167: Tub family; contains
           Pfam PF00646: F-box domain
          Length = 379

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 25/97 (25%), Positives = 40/97 (41%)
 Frame = -3

Query: 487 DFLARAQPQVEGVAEDNLRASGFNFFRRHPFYGAVGANRHKTRRFHYATIKDQAATACAT 308
           DF   +   V  +  D L  +   +  + P  GA  +N   +RRF    I  Q       
Sbjct: 167 DFSQGSNAYVGKLRSDFLGTNFTVYDSQPPHNGAKPSNGKASRRFASKQISPQVPAGNFE 226

Query: 307 VGGVQFKFHFFSIRQKNSQRFKPAPRNYSPTRSLIAA 197
           VG V +KF+   ++ +  +R     R  SP+ S  +A
Sbjct: 227 VGHVSYKFNL--LKSRGPRRMVSTLRCPSPSPSSSSA 261


>At4g24970.1 68417.m03578 ATP-binding region, ATPase-like
           domain-containing protein low similarity to microrchidia
           [Mus musculus] GI:5410255; contains Pfam profile
           PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
           HSP90-like domain protein
          Length = 707

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = -3

Query: 457 EGVAEDN--LRASGFNFFRRHPFYGAVGANRHKTRRFHYATIKDQAATACAT 308
           EG A DN  L + GF+  R HP +    A  HK     +A + D A    A+
Sbjct: 145 EGAAGDNWDLSSGGFDHVRVHPKFLHSNATSHKWALGAFAELLDNALDEVAS 196


>At2g15690.1 68415.m01796 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 579

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -3

Query: 319 ACATVGGVQFKF-HFFSIRQKNSQRFKPAPRNY 224
           ACATVGG++  F HF S+  KN     P   +Y
Sbjct: 346 ACATVGGIEEAFLHFDSM--KNEHGISPKTEHY 376


>At3g05360.1 68416.m00584 disease resistance family protein / LRR
           family protein contains leucine rich-repeat domains
           Pfam:PF00560, INTERPRO:IPR001611; similar to
           elicitor-inducible LRR receptor-like protein EILP
           [Nicotiana tabacum] gi|6635236|dbj|BAA88636; similar to
           Cf-2.2 [Lycopersicon pimpinellifolium]
           gi|1184077|gb|AAC15780
          Length = 786

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -2

Query: 224 LPDALINCCGLYVINIASP*LKKRYFSSTAAL 129
           LP +LINC G+ ++N+ S  +K  + S   +L
Sbjct: 465 LPKSLINCTGMELLNVGSNIIKDTFPSWLVSL 496


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,379,664
Number of Sequences: 28952
Number of extensions: 311496
Number of successful extensions: 720
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)