Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0642.Seq
         (897 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2GSA9 Cluster: Putative uncharacterized protein; n=3; ...    51   5e-05
UniRef50_UPI0000ECD483 Cluster: UPI0000ECD483 related cluster; n...    48   4e-04
UniRef50_UPI0000F2EBCE Cluster: PREDICTED: hypothetical protein;...    40   0.086
UniRef50_A1VP16 Cluster: Peptidase C14, caspase catalytic subuni...    34   5.7  
UniRef50_Q7N0G3 Cluster: Similarities with ribonuclease; n=1; Ph...    33   7.5  
UniRef50_Q1DEJ1 Cluster: Putative uncharacterized protein; n=5; ...    33   9.9  
UniRef50_Q0YKB8 Cluster: ATP dependent DNA ligase-like:ATP depen...    33   9.9  
UniRef50_A0C166 Cluster: Chromosome undetermined scaffold_141, w...    33   9.9  

>UniRef50_A2GSA9 Cluster: Putative uncharacterized protein; n=3;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 76

 Score = 50.8 bits (116), Expect = 5e-05
 Identities = 31/69 (44%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
 Frame = +2

Query: 203 SWNYRGCWHQTCPPIVPLKIFKVYSFRLRGLVRVPYRYFSSLPP-RAGSG*FARLLPSLD 379
           SWNYR CWHQT P    L  F     R        +++  SLPP +  SG  +RLL  +D
Sbjct: 7   SWNYRSCWHQTGP----LLGFGTVENRTPIHSTKRHQWNWSLPPPKVSSGKVSRLLLPVD 62

Query: 380 VVAVSQAPS 406
           +VA+SQAPS
Sbjct: 63  IVAISQAPS 71


>UniRef50_UPI0000ECD483 Cluster: UPI0000ECD483 related cluster; n=1;
           Gallus gallus|Rep: UPI0000ECD483 UniRef100 entry -
           Gallus gallus
          Length = 103

 Score = 47.6 bits (108), Expect = 4e-04
 Identities = 23/32 (71%), Positives = 26/32 (81%)
 Frame = +2

Query: 254 LKIFKVYSFRLRGLVRVPYRYFSSLPPRAGSG 349
           +K FKV SF+L+GL RV Y YFSSLPPR GSG
Sbjct: 72  VKGFKVDSFQLQGLERVLYCYFSSLPPRVGSG 103


>UniRef50_UPI0000F2EBCE Cluster: PREDICTED: hypothetical protein;
           n=1; Monodelphis domestica|Rep: PREDICTED: hypothetical
           protein - Monodelphis domestica
          Length = 493

 Score = 39.9 bits (89), Expect = 0.086
 Identities = 17/19 (89%), Positives = 17/19 (89%)
 Frame = +1

Query: 292 PRKSPVSLFFVTTSPCREW 348
           PRKSPV LFFVTTSP REW
Sbjct: 24  PRKSPVLLFFVTTSPGREW 42


>UniRef50_A1VP16 Cluster: Peptidase C14, caspase catalytic subunit
           p20; n=1; Polaromonas naphthalenivorans CJ2|Rep:
           Peptidase C14, caspase catalytic subunit p20 -
           Polaromonas naphthalenivorans (strain CJ2)
          Length = 562

 Score = 33.9 bits (74), Expect = 5.7
 Identities = 15/33 (45%), Positives = 22/33 (66%)
 Frame = +2

Query: 107 VSVSPRMRAXDSAAHKCNYELFNRNNFSIRYWS 205
           V+  PR+RA D AA + NY L NR+N+ +  W+
Sbjct: 163 VNAPPRVRAADPAAVQANY-LANRSNYEVSQWT 194


>UniRef50_Q7N0G3 Cluster: Similarities with ribonuclease; n=1;
           Photorhabdus luminescens subsp. laumondii|Rep:
           Similarities with ribonuclease - Photorhabdus
           luminescens subsp. laumondii
          Length = 272

 Score = 33.5 bits (73), Expect = 7.5
 Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
 Frame = +2

Query: 83  SPTICSANVSVSPRMRAXDSAAH-KCNYELFNRNNFSIRYWSWNYRGCWHQTC 238
           SP  C        R++  +  A  +  YE F    FS   +SW   G W QTC
Sbjct: 92  SPAFCKGKAKNIERLKKSNKLAEAQREYEKFELQCFSENKFSWVIHGLWAQTC 144


>UniRef50_Q1DEJ1 Cluster: Putative uncharacterized protein; n=5;
           Bacteria|Rep: Putative uncharacterized protein -
           Myxococcus xanthus (strain DK 1622)
          Length = 235

 Score = 33.1 bits (72), Expect = 9.9
 Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 1/94 (1%)
 Frame = -2

Query: 545 G*LGAIRIATLEGNSWIVARRTSAKAFAKGVFINQERKLEVRRRLDEREPEKRLP-HPRK 369
           G  G  R     G SW VA +   K F++GV+  +   L  R  L   E E+  P + +K
Sbjct: 46  GDAGLTRRVKAAGPSWTVAEKVGRKLFSRGVWAPEAHILHARAAL---EAERATPAYEKK 102

Query: 368 AAGAQITHSRHGEVVTKNNDTGLLRGLVIGMSTL 267
            A  +   +R  E    +    +LR L    + L
Sbjct: 103 LAAGRERRAREQEAYEVDFANAVLRFLAFSPAWL 136


>UniRef50_Q0YKB8 Cluster: ATP dependent DNA ligase-like:ATP
           dependent DNA ligase, central; n=2; Bacteria|Rep: ATP
           dependent DNA ligase-like:ATP dependent DNA ligase,
           central - Geobacter sp. FRC-32
          Length = 829

 Score = 33.1 bits (72), Expect = 9.9
 Identities = 19/62 (30%), Positives = 31/62 (50%)
 Frame = -2

Query: 566 LRGND**G*LGAIRIATLEGNSWIVARRTSAKAFAKGVFINQERKLEVRRRLDEREPEKR 387
           L G+   G    ++I + +GNSW++ ++    A A  +    +R +   RRLDE  PE  
Sbjct: 135 LHGHKLKGRFALVKIRSGKGNSWLLVKKDDEHATAADI-TRHDRSVVSGRRLDELGPEGE 193

Query: 386 LP 381
            P
Sbjct: 194 EP 195


>UniRef50_A0C166 Cluster: Chromosome undetermined scaffold_141,
           whole genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_141,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 387

 Score = 33.1 bits (72), Expect = 9.9
 Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 1/117 (0%)
 Frame = +2

Query: 239 PPIVPLKIFKVYSFRLRGLVRVPYRYFSSLPPRAGSG*FARLLPSLDVVAVSQAPSHLIA 418
           PP +   I+       RG++ +PY+    LP          L+P  DV A  Q+P+    
Sbjct: 28  PPQIQSDIYNYTPHESRGIILLPYQQNYQLP--------GTLIPQQDVQADIQSPARGYE 79

Query: 419 FEPLTFVLD**KHLWQML-SLMFVLRRSKNFPLTSQYEWPPVIPINHYLGVLKNQQK 586
              L  + D  KH+ Q L  L   L++ K   L  + ++  +   N  L    N+QK
Sbjct: 80  INSLANISDNIKHITQNLEELQVELKQEKQKRLDIENKFEQLQQQNQELEQELNKQK 136


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 774,655,515
Number of Sequences: 1657284
Number of extensions: 14403510
Number of successful extensions: 31352
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 30478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31337
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 81161904978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)