Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0642.Seq
         (897 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    28   0.086
AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory recept...    22   7.5  
DQ855498-1|ABH88185.1|  127|Tribolium castaneum chemosensory pro...    21   9.9  
AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    21   9.9  
AJ973445-1|CAJ01492.1|  127|Tribolium castaneum hypothetical pro...    21   9.9  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 28.3 bits (60), Expect = 0.086
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +2

Query: 176 RNNFSIRYWSWNYRGCWHQTC 238
           R+NF   +  WNY  CW   C
Sbjct: 746 RHNFKGLHLDWNYPVCWQSNC 766



 Score = 23.4 bits (48), Expect = 2.5
 Identities = 8/25 (32%), Positives = 9/25 (36%)
 Frame = +2

Query: 164  ELFNRNNFSIRYWSWNYRGCWHQTC 238
            +    NNF      W Y  CW   C
Sbjct: 1930 DFIETNNFDGLDLDWEYPKCWQVDC 1954


>AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory receptor
           candidate 33 protein.
          Length = 321

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 5/16 (31%), Positives = 9/16 (56%)
 Frame = +2

Query: 185 FSIRYWSWNYRGCWHQ 232
           +++ YW   Y   WH+
Sbjct: 117 YAVYYWRQQYEDFWHR 132


>DQ855498-1|ABH88185.1|  127|Tribolium castaneum chemosensory
           protein 12 protein.
          Length = 127

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 12/46 (26%), Positives = 20/46 (43%)
 Frame = +2

Query: 131 AXDSAAHKCNYELFNRNNFSIRYWSWNYRGCWHQTCPPIVPLKIFK 268
           A  ++  KC+    + +   IRY   N R  W++      P  I+K
Sbjct: 68  ALQTSCSKCSQRQKDGSRTIIRYLIKNKRDWWNELEAKYDPTGIYK 113


>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = +2

Query: 146 AHKCNYELFNRNNFSIRYWSWNYRGCWHQTCPPIVPLKIFKVYSF 280
           +H    E F  N F ++  +      WH   P     KIF V+SF
Sbjct: 2   SHSNPLEAFKLNTFFLKALT-----VWHVENPTYRLYKIFVVFSF 41


>AJ973445-1|CAJ01492.1|  127|Tribolium castaneum hypothetical
           protein protein.
          Length = 127

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 12/46 (26%), Positives = 20/46 (43%)
 Frame = +2

Query: 131 AXDSAAHKCNYELFNRNNFSIRYWSWNYRGCWHQTCPPIVPLKIFK 268
           A  ++  KC+    + +   IRY   N R  W++      P  I+K
Sbjct: 68  ALQTSCSKCSQRQQDGSRTIIRYLIKNKRDWWNELEAKYDPTGIYK 113


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,998
Number of Sequences: 336
Number of extensions: 3603
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24927353
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)