Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0642.Seq
(897 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 9e-08
SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 1e-05
SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 1e-05
SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 1e-05
SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 1e-05
SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 4e-05
SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 4e-05
SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.019
SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.019
SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.059
SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.10
SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.10
SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.55
SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.55
SB_492| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_15948| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_51889| Best HMM Match : PPTA (HMM E-Value=6.3e-34) 29 6.7
SB_34251| Best HMM Match : FA_hydroxylase (HMM E-Value=5.5) 29 6.7
SB_33198| Best HMM Match : 7tm_1 (HMM E-Value=9.80909e-45) 28 8.9
SB_12127| Best HMM Match : Endonuclease_NS (HMM E-Value=2.9e-35) 28 8.9
SB_595| Best HMM Match : CH (HMM E-Value=0) 28 8.9
>SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 54.8 bits (126), Expect = 9e-08
Identities = 26/32 (81%), Positives = 27/32 (84%)
Frame = -2
Query: 503 SWIVARRTSAKAFAKGVFINQERKLEVRRRLD 408
SWI RRT+AKAFAK VFINQERKLE RRR D
Sbjct: 4 SWIYERRTTAKAFAKNVFINQERKLEDRRRSD 35
>SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 48.0 bits (109), Expect = 1e-05
Identities = 23/27 (85%), Positives = 24/27 (88%)
Frame = -2
Query: 488 RRTSAKAFAKGVFINQERKLEVRRRLD 408
RRT+AKAFAK VFINQERKLE RRR D
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRRSD 35
>SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 48.0 bits (109), Expect = 1e-05
Identities = 23/27 (85%), Positives = 24/27 (88%)
Frame = -2
Query: 488 RRTSAKAFAKGVFINQERKLEVRRRLD 408
RRT+AKAFAK VFINQERKLE RRR D
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRRSD 35
>SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 48.0 bits (109), Expect = 1e-05
Identities = 23/27 (85%), Positives = 24/27 (88%)
Frame = -2
Query: 488 RRTSAKAFAKGVFINQERKLEVRRRLD 408
RRT+AKAFAK VFINQERKLE RRR D
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRRSD 35
>SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 48
Score = 48.0 bits (109), Expect = 1e-05
Identities = 23/27 (85%), Positives = 24/27 (88%)
Frame = -2
Query: 488 RRTSAKAFAKGVFINQERKLEVRRRLD 408
RRT+AKAFAK VFINQERKLE RRR D
Sbjct: 11 RRTTAKAFAKNVFINQERKLEDRRRSD 37
>SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 99
Score = 46.0 bits (104), Expect = 4e-05
Identities = 22/26 (84%), Positives = 23/26 (88%)
Frame = -2
Query: 485 RTSAKAFAKGVFINQERKLEVRRRLD 408
RT+AKAFAK VFINQERKLE RRR D
Sbjct: 2 RTTAKAFAKNVFINQERKLEDRRRSD 27
>SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 65
Score = 46.0 bits (104), Expect = 4e-05
Identities = 22/26 (84%), Positives = 23/26 (88%)
Frame = -2
Query: 485 RTSAKAFAKGVFINQERKLEVRRRLD 408
RT+AKAFAK VFINQERKLE RRR D
Sbjct: 29 RTTAKAFAKNVFINQERKLEDRRRSD 54
>SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 37.1 bits (82), Expect = 0.019
Identities = 16/26 (61%), Positives = 17/26 (65%)
Frame = -1
Query: 507 KFLDRRKTNISESICQRCFHQSRTKV 430
KFLD RKTN ESICQ CF K+
Sbjct: 3 KFLDLRKTNYCESICQECFINQERKL 28
Score = 29.5 bits (63), Expect = 3.9
Identities = 15/28 (53%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = -2
Query: 488 RRTS-AKAFAKGVFINQERKLEVRRRLD 408
R+T+ ++ + FINQERKLE RRR D
Sbjct: 8 RKTNYCESICQECFINQERKLEDRRRSD 35
>SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 37.1 bits (82), Expect = 0.019
Identities = 16/26 (61%), Positives = 17/26 (65%)
Frame = -1
Query: 507 KFLDRRKTNISESICQRCFHQSRTKV 430
KFLD RKTN ESICQ CF K+
Sbjct: 3 KFLDLRKTNYCESICQECFINQERKL 28
Score = 29.5 bits (63), Expect = 3.9
Identities = 15/28 (53%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = -2
Query: 488 RRTS-AKAFAKGVFINQERKLEVRRRLD 408
R+T+ ++ + FINQERKLE RRR D
Sbjct: 8 RKTNYCESICQECFINQERKLEDRRRSD 35
>SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 35.5 bits (78), Expect = 0.059
Identities = 18/28 (64%), Positives = 22/28 (78%), Gaps = 1/28 (3%)
Frame = -2
Query: 488 RRTS-AKAFAKGVFINQERKLEVRRRLD 408
R+T+ ++ AK VFINQERKLE RRR D
Sbjct: 8 RKTNYCESIAKNVFINQERKLEDRRRSD 35
>SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 180
Score = 34.7 bits (76), Expect = 0.10
Identities = 20/40 (50%), Positives = 22/40 (55%)
Frame = -3
Query: 253 RNNWRASLXXXXXXXXXXXAYTKIVAVKKLVVAFVRRAVG 134
R +WRASL AY K+VAVKKLVV F VG
Sbjct: 61 RIHWRASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVG 100
>SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 57
Score = 34.7 bits (76), Expect = 0.10
Identities = 20/40 (50%), Positives = 22/40 (55%)
Frame = -3
Query: 253 RNNWRASLXXXXXXXXXXXAYTKIVAVKKLVVAFVRRAVG 134
R +WRASL AY K+VAVKKLVV F VG
Sbjct: 14 RIHWRASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVG 53
>SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 32.3 bits (70), Expect = 0.55
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = -1
Query: 510 GKFLDRRKTNISESICQRCFHQSRTKV 430
G+ L RKTN ESICQ CF K+
Sbjct: 2 GEILGFRKTNYCESICQECFINQERKL 28
Score = 29.5 bits (63), Expect = 3.9
Identities = 15/28 (53%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = -2
Query: 488 RRTS-AKAFAKGVFINQERKLEVRRRLD 408
R+T+ ++ + FINQERKLE RRR D
Sbjct: 8 RKTNYCESICQECFINQERKLEDRRRSD 35
>SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 32.3 bits (70), Expect = 0.55
Identities = 15/26 (57%), Positives = 16/26 (61%)
Frame = -1
Query: 507 KFLDRRKTNISESICQRCFHQSRTKV 430
KFLD RKTN ESICQ F K+
Sbjct: 3 KFLDLRKTNYCESICQDVFINQERKL 28
Score = 31.9 bits (69), Expect = 0.72
Identities = 16/28 (57%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
Frame = -2
Query: 488 RRTS-AKAFAKGVFINQERKLEVRRRLD 408
R+T+ ++ + VFINQERKLE RRR D
Sbjct: 8 RKTNYCESICQDVFINQERKLEDRRRSD 35
>SB_492| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 67
Score = 29.5 bits (63), Expect = 3.9
Identities = 19/41 (46%), Positives = 20/41 (48%)
Frame = -3
Query: 256 KRNNWRASLXXXXXXXXXXXAYTKIVAVKKLVVAFVRRAVG 134
KR ASL AY K+VAVKKLVV F VG
Sbjct: 23 KRERRAASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVG 63
>SB_15948| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 29.1 bits (62), Expect = 5.1
Identities = 18/36 (50%), Positives = 19/36 (52%)
Frame = -3
Query: 241 RASLXXXXXXXXXXXAYTKIVAVKKLVVAFVRRAVG 134
RASL AY K+VAVKKLVV F VG
Sbjct: 5 RASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVG 40
>SB_51889| Best HMM Match : PPTA (HMM E-Value=6.3e-34)
Length = 428
Score = 28.7 bits (61), Expect = 6.7
Identities = 18/49 (36%), Positives = 22/49 (44%)
Frame = -2
Query: 434 KLEVRRRLDEREPEKRLPHPRKAAGAQITHSRHGEVVTKNNDTGLLRGL 288
+L R R +ER P R+PH A AQ T R DTG G+
Sbjct: 259 RLLTRLRNEERPPVGRMPHNSSARLAQQTGDRGWSGAVWGADTGDTAGM 307
>SB_34251| Best HMM Match : FA_hydroxylase (HMM E-Value=5.5)
Length = 203
Score = 28.7 bits (61), Expect = 6.7
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = +2
Query: 155 CNYELFNRNNFSIRYWSWNYRGCWH 229
C + RN +RYW W R C H
Sbjct: 91 CEVTVIARNILPVRYWIWLSRKCGH 115
>SB_33198| Best HMM Match : 7tm_1 (HMM E-Value=9.80909e-45)
Length = 762
Score = 28.3 bits (60), Expect = 8.9
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = -1
Query: 360 RANYPLPARGGSDEK*RYGTLTRPRNRNEYTLNILRGTIGGQVW 229
R P GGS K + + +N N T+NI RG G W
Sbjct: 420 RTRLPATKSGGSHIKFLQEAILQKKNNNNLTININRGGGGTNRW 463
>SB_12127| Best HMM Match : Endonuclease_NS (HMM E-Value=2.9e-35)
Length = 1577
Score = 28.3 bits (60), Expect = 8.9
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Frame = -1
Query: 528 SYCD----VRGKFLDRRKTNISESICQRCFH-QSRTKVRGSKAIR*EGA*ETATTSK 373
SYCD VR + L + ++++ C+RCFH Q++T G I G AT +
Sbjct: 583 SYCDRCMNVRTRSLGVGECCLTDNFCERCFHLQTKTIGTGDYDINDSGYDLRATADR 639
>SB_595| Best HMM Match : CH (HMM E-Value=0)
Length = 905
Score = 28.3 bits (60), Expect = 8.9
Identities = 12/26 (46%), Positives = 20/26 (76%), Gaps = 2/26 (7%)
Frame = -3
Query: 406 RGSLRNGYHIQGRQQA--RKLPTPGT 335
RG++++GY+ +QQA RK+P PG+
Sbjct: 333 RGTIQSGYYFCKQQQAARRKIPKPGS 358
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,014,014
Number of Sequences: 59808
Number of extensions: 456355
Number of successful extensions: 1006
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2574115416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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