Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0642.Seq
         (897 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF042732-2|AAC18057.1|  179|Anopheles gambiae TU37B2 protein.          26   1.4  
CR954256-3|CAJ14144.1|  659|Anopheles gambiae cyclin protein.          26   1.8  

>AF042732-2|AAC18057.1|  179|Anopheles gambiae TU37B2 protein.
          Length = 179

 Score = 26.2 bits (55), Expect = 1.4
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 512 EGNSWIVARRTSAKAFAKGVFINQERKLEVRR 417
           EG +W++  RT      KG    Q +KLE R+
Sbjct: 20  EGLTWVMVYRTEKYQKLKGEVEKQSKKLEKRK 51


>CR954256-3|CAJ14144.1|  659|Anopheles gambiae cyclin protein.
          Length = 659

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 17/61 (27%), Positives = 30/61 (49%)
 Frame = -1

Query: 513 RGKFLDRRKTNISESICQRCFHQSRTKVRGSKAIR*EGA*ETATTSKEGSRRANYPLPAR 334
           R K L +   + S S+ +     SR++ RGS++        + + ++    R+  PLPAR
Sbjct: 409 RSKSLSKSSRSRSRSLSRSV---SRSRSRGSRSRSRTSQSRSRSKTRTSRSRSRTPLPAR 465

Query: 333 G 331
           G
Sbjct: 466 G 466


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 799,236
Number of Sequences: 2352
Number of extensions: 15619
Number of successful extensions: 47
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 96747534
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)